RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CD1CP29017 333 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 CSTF2P33240 577 aaKnown RBP eCLIP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 LIMK2P53671 638 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 DCDC1P59894 354 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 CFHR1Q03591 330 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 CDK18Q07002 472 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 IHHQ14623 411 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 PTPRRQ15256 657 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 TEX44Q53QW1 395 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 HENMT1Q5T8I9 393 aaKnown RBP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 ZDHHC20Q5W0Z9 365 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 TMEM71Q6P5X7 295 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 RFLNAQ6ZTI6 216 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 MARK2Q7KZI7 788 aaKnown RBP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 LYSMD3Q7Z3D4 306 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 SLC9B2Q86UD5 537 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 CPNE8Q86YQ8 564 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 RFX6Q8HWS3 928 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 SFRP1Q8N474 314 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 CNTD1Q8N815 330 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 AGBL5Q8NDL9 886 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 AHCYL2Q96HN2 611 aaKnown RBP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 AGAP3Q96P47 875 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 OLFM3Q96PB7 478 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 TAAR9Q96RI9 348 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 AGAP2Q99490 1192 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 VAT1Q99536 393 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 ASPSCR1Q9BZE9 553 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 SEMA6CQ9H3T2 930 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 RDH14Q9HBH5 336 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 TRIM39Q9HCM9 518 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 SPTLC3Q9NUV7 552 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 NFKBIL1Q9UBC1 381 aaPredicted RBP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 CNOT6Q9ULM6 557 aaKnown RBP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 PCDHGA3Q9Y5H0 932 aa10.79□□□□□ -0.68
VTI1BP3-201ENST00000550220 UNC13CQ8NB66 2214 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 SMG1Q96Q15 3661 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 IGHV1OR21-1A0A087WYE8 117 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 A0A0A6YYK5 440 aaPredicted RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 KIR2DS5A0A0G2JLQ3 304 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 A0A0G2JNG1 304 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 IGHV5-10-1A0A0J9YXX1 117 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 PMS2P1A4D2B8 440 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 KIR2DS3K7RE56 304 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 CASC3O15234 703 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 PPM1DO15297 605 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 INPP4BO15327 924 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 GRID2O43424 1007 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 DUX1O43812 170 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 NUAK1O60285 661 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 DNAJC6O75061 913 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 ZRANB2O95218 330 aaKnown RBP eCLIP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 NDST3O95803 873 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 MAGEA1P43355 309 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 NOP2P46087 812 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 CLCNKAP51800 687 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 EPHA4P54764 986 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 HADHBP55084 474 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 ZBTB17Q13105 803 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 KIR2DS5Q14953 304 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 SPA17Q15506 151 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 ZNF569Q5MCW4 686 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 MANEAQ5SRI9 462 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 IYDQ6PHW0 289 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 WDR74Q6RFH5 385 aaPredicted RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 CHST15Q7LFX5 561 aaPredicted RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 TMC3Q7Z5M5 1100 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 ZNF605Q86T29 641 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 PHYKPLQ8IUZ5 450 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 SFTPA2Q8IWL1 248 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 CCDC170Q8IYT3 715 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 RCOR2Q8IZ40 523 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 TRAM1L1Q8N609 369 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 DTX3LQ8TDB6 740 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 PTCD2Q8WV60 388 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 TFB1MQ8WVM0 346 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 USP7Q93009 1102 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 RNF25Q96BH1 459 aaPredicted RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 TEKT5Q96M29 485 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 TRIB3Q96RU7 358 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 FERMT1Q9BQL6 677 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 SPATA16Q9BXB7 569 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 GPR63Q9BZJ6 419 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 TRABDQ9H4I3 376 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 SARS2Q9NP81 518 aaKnown RBP10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 ST14Q9Y5Y6 855 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 BAHCC1Q9P281 2608 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 NBEAQ8NFP9 2946 aa10.78□□□□□ -0.68
VTI1BP3-201ENST00000550220 PRAMEF33A0A0G2JMD5 474 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 A0A0U1RQS6 177 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 B4E171 279 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 STMND1H3BQB6 276 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 VEGFDO43915 354 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 PRAMEF10O60809 474 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 KCNJ13O60928 360 aa10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 SLC25A14O95258 325 aaPredicted RBP10.77□□□□□ -0.69
VTI1BP3-201ENST00000550220 ITGB2P05107 769 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms