RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 MEN1O00255 615 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 MAPK13O15264 365 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 TOX3O15405 576 aaPredicted RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 DDX3YO15523 660 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 CPNE3O75131 537 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 CRLF1O75462 422 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 RASSF9O75901 435 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 IPO13O94829 963 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 LCA5LO95447 670 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 TPOP07202 933 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 VDRP11473 427 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 GPD2P43304 727 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 SMSP52788 366 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 SNRPD1P62314 119 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 KRTAP1-1Q07627 177 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 NCF4Q15080 339 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 PTPRRQ15256 657 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 GPR19Q15760 415 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 E2F4Q16254 413 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.72□□□□□ -1.65
USP4-209ENST00000475873 PTCHD3Q3KNS1 767 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF789Q5FWF6 425 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZFYVE27Q5T4F4 411 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 CACHD1Q5VU97 1274 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 AFMIDQ63HM1 303 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF385CQ66K41 422 aaPredicted RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 MCTP1Q6DN14 999 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 FCRL6Q6DN72 434 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 RPUSD3Q6P087 351 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 DOK6Q6PKX4 331 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 C3P1Q6ZMU1 363 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 RFLNAQ6ZTI6 216 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 MARK2Q7KZI7 788 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 PPP1R32Q7Z5V6 425 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 CHERPQ8IWX8 916 aaKnown RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 DRC7Q8IY82 874 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 DEFB106AQ8N104 65 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 CLEC1AQ8NC01 280 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 TMEM174Q8WUU8 243 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 TM9SF4Q92544 642 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF501Q96CX3 271 aaPredicted RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF514Q96K75 400 aaPredicted RBP4.72□□□□□ -1.65
USP4-209ENST00000475873 LRFN5Q96NI6 719 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 FCRL4Q96PJ5 515 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 DMRTA2Q96SC8 542 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF559Q9BR84 538 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 MESP1Q9BRJ9 268 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ANP32EQ9BTT0 268 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 NDC1Q9BTX1 674 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 IMPG2Q9BZV3 1241 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 TTYH3Q9C0H2 523 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 KCTD10Q9H3F6 313 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 FAM204AQ9H8W3 233 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 POPDC2Q9HBU9 364 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 SLC39A2Q9NP94 309 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 WASH6PQ9NQA3 447 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 PIGVQ9NUD9 493 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 PCMTD2Q9NV79 361 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 KBTBD4Q9NVX7 518 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 P4HTMQ9NXG6 502 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 CPNE7Q9UBL6 633 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 RARRES3Q9UL19 164 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 NEU3Q9UQ49 428 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ZNF835Q9Y2P0 537 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 FHOD1Q9Y613 1164 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 MPDZO75970 2070 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 ABCA1O95477 2261 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 DNAJC13O75165 2243 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 USF3Q68DE3 2245 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 NKX2-6A6NCS4 301 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 H7C1Q1 480 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 SCRG1O75711 98 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 GRAP2O75791 330 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 UBXN7O94888 489 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 KLHL18O94889 574 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 TOXO94900 526 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 ATE1O95260 518 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 NR3C1P04150 777 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 UMODP07911 640 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 SLC2A3P11169 496 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 MSX1P28360 303 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 SCNN1AP37088 669 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 STAT6P42226 847 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 CAPZBP47756 277 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 RGRP47804 291 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 CXCR3P49682 368 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 MCCD1P59942 119 aaPredicted RBP4.71□□□□□ -1.66
USP4-209ENST00000475873 YWHAZP63104 245 aaKnown RBP4.71□□□□□ -1.66
USP4-209ENST00000475873 IRX6P78412 446 aaPredicted RBP4.71□□□□□ -1.66
USP4-209ENST00000475873 HMGN5P82970 282 aaKnown RBP4.71□□□□□ -1.66
USP4-209ENST00000475873 PMP22Q01453 160 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 NME3Q13232 169 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 CUL2Q13617 745 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 DSG2Q14126 1118 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 TLR1Q15399 786 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 CNGA2Q16280 664 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 DEFB113Q30KQ7 82 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 KRTAP24-1Q3LI83 254 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 HIST2H2BDQ6DRA6 164 aa4.71□□□□□ -1.66
USP4-209ENST00000475873 DENND1BQ6P3S1 775 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms