RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TDRKHQ9Y2W6 561 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 GIT1Q9Y2X7 761 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 SERPINB7O75635 380 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 OR6B1O95007 311 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC18A2Q05940 514 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 PARP15Q460N3 678 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ZFP69Q49AA0 526 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 CRY2Q49AN0 593 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 TMEM126BQ8IUX1 230 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ABCG8Q9H221 673 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 APOBEC3GQ9HC16 384 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF232Q9UNY5 417 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 PKMP14618 531 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 CARTPTQ16568 116 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 PCDH12Q9NPG4 1184 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SPG21Q9NZD8 308 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 PTGFRNQ9P2B2 879 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SUCOQ9UBS9 1254 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 AGO1Q9UL18 857 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 NCKAP1Q9Y2A7 1128 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 DLG5Q8TDM6 1919 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 UBE2QL1A1L167 161 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC6A2P23975 617 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 AP5B1Q2VPB7 878 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 HECTD3Q5T447 861 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ADAM2Q99965 735 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 EBF4Q9BQW3 602 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 LRTM1Q9HBL6 345 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNHIT2Q9UHR6 403 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 MAFBQ9Y5Q3 323 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 MPZL2O60487 215 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SMIM10L2AP0DMW4 78 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SMIM10L2BP0DMW5 78 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SEPHS1P49903 392 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 CRYBB1P53674 252 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 POU5F1Q01860 360 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 CLCQ05315 142 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ACOX1Q15067 660 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 C1orf127Q8N9H9 656 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 STYXQ8WUJ0 223 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF607Q96SK3 696 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC9A7Q96T83 725 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 CCDC3Q9BQI4 270 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF222Q9UK12 451 aa18.92■□□□□ 0.62
CCDC88B-204ENST00000463837 NR4A1P22736 598 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 MON1AQ86VX9 555 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 ZC3H3Q8IXZ2 948 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 DNAJB8Q8NHS0 232 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 CSGALNACT1Q8TDX6 532 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 TFAP2BQ92481 460 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 FCGR1BQ92637 280 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 NPEPPSL1A6NEC2 478 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC9A3R1O14745 358 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 FABP3P05413 133 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 ITGAXP20702 1163 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 DNAJB1P25685 340 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 L1CAMP32004 1257 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 PSMD4P55036 377 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 ECT2LQ008S8 904 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 DLG1Q12959 904 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 TRIM32Q13049 653 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 FSTL5Q8N475 847 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 PPM1MQ96MI6 270 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 PSME2Q9UL46 239 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 A0A088AWK7 358 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 BTN3A3O00478 584 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF10P21506 573 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 MYL9P24844 172 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 ICAM3P32942 547 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 GUCA1AP43080 201 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC5A3P53794 718 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 ZBED5Q49AG3 693 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 XKR6Q5GH73 641 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 PCDH19Q8TAB3 1148 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 COPS5Q92905 334 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 MFSD3Q96ES6 412 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 C1QTNF7Q9BXJ2 289 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 TMPRSS4Q9NRS4 437 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 PDP1Q9P0J1 537 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 CLDN5O00501 218 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 OR10H3O60404 316 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 FKBP1BP68106 108 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 NRG1Q02297 640 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 GALNT3Q14435 633 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 EEF1AKMT1Q8WVE0 214 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 PIK3R3Q92569 461 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC25A51Q9H1U9 297 aa18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 AGO3Q9H9G7 860 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-204ENST00000463837 UBXN8O00124 270 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 MT-ND1P03886 318 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 MRPS6P82932 125 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 SETMARQ53H47 684 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 GPR158Q5T848 1215 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 KLHDC10Q6PID8 442 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 OTOP3Q7RTS5 596 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 SLIT2O94813 1529 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 FAM159BA6NKW6 160 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 FAM47E-STBD1D6RA91 191 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 LRATO95237 230 aa18.9■□□□□ 0.62
CCDC88B-204ENST00000463837 MPP1Q00013 466 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms