RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 CDK15Q96Q40 435 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 HAPLN3Q96S86 360 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 SORT1Q99523 831 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 BDH2Q9BUT1 245 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 SACM1LQ9NTJ5 587 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 MARCH4Q9P2E8 410 aaPredicted RBP12.62□□□□□ -0.39
RETREG3-201ENST00000309428 ZMYM5Q9UJ78 669 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 AAR2Q9Y312 384 aaKnown RBP12.62□□□□□ -0.39
RETREG3-201ENST00000309428 FBP2O00757 339 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 B4GALT3O60512 393 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 ARHGDIAP52565 204 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 PRKCQQ04759 706 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 PIWIL4Q7Z3Z4 852 aaKnown RBP12.62□□□□□ -0.39
RETREG3-201ENST00000309428 KLHDC9Q8NEP7 349 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 SH3RF2Q8TEC5 729 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 UNC93B1Q9H1C4 597 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 TRIM39Q9HCM9 518 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 TBC1D13Q9NVG8 400 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 HS3ST4Q9Y661 456 aa12.62□□□□□ -0.39
RETREG3-201ENST00000309428 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 H2AFYO75367 372 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 IL7RP16871 459 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 WARSP23381 471 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 GABRB3P28472 473 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 DPYSQ14117 519 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 RABL3Q5HYI8 236 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 CST9Q5W186 159 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 ZC3HC1Q86WB0 502 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 SLC7A5P1Q8MH63 180 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 LINC01465Q8N7H1 131 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 ITFG1Q8TB96 612 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 RORBQ92753 470 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 MTFMTQ96DP5 389 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 TMEM74Q96NL1 305 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 NSUN5Q96P11 429 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 SMAD5Q99717 465 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 RASSF1Q9NS23 344 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 RBBP6Q7Z6E9 1792 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 C7orf72A4D263 438 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 TBKBP1A7MCY6 615 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 H0Y858 1186 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 UBXN8O00124 270 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 NDUFS3O75489 264 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 APOA1P02647 267 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 GKP32189 559 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 CDK9P50750 372 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 POU4F1Q01851 419 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 MERTKQ12866 999 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 AASDHQ4L235 1098 aaPredicted RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 PKN3Q6P5Z2 889 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 TPGS1Q6ZTW0 290 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 C11orf74Q86VG3 221 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 CACUL1Q86Y37 369 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 OR8H2Q8N162 312 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 TXNDC5Q8NBS9 432 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 NUDT8Q8WV74 236 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 HERC2P3Q9BVR0 1158 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 OSER1Q9NX31 292 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 GDAP2Q9NXN4 497 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 SNX8Q9Y5X2 465 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 COL1A2P08123 1366 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 URB1O60287 2271 aaKnown RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 CCDC154A6NI56 674 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 TMEM114B3SHH9 223 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 MATN2O00339 956 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 SOCS2O14508 198 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 PENKP01210 267 aaPredicted RBP12.61□□□□□ -0.39
RETREG3-201ENST00000309428 ELK4P28324 431 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 PCID2Q5JVF3 399 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 PAGE2Q7Z2X7 111 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 CARNMT1Q8N4J0 409 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 CDYL2Q8N8U2 506 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 TRPV1Q8NER1 839 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 RHOJQ9H4E5 214 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 AMBNQ9NP70 447 aa12.61□□□□□ -0.39
RETREG3-201ENST00000309428 PRORSD1PA6NEY8 169 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 AOC2O75106 756 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 S100A5P33763 92 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 HALP42357 657 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 SERPINH1P50454 418 aaKnown RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 GEMP55040 296 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 CDC42EP1Q00587 391 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 P3H2Q8IVL5 708 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 TSPAN17Q96FV3 270 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 ZNF419Q96HQ0 510 aaPredicted RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 ZBED2Q9BTP6 218 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 HMG20AQ9NP66 347 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 VPS45Q9NRW7 570 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 OXSMQ9NWU1 459 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 FER1L6Q2WGJ9 1857 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 ENPP3O14638 875 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 FFAR3O14843 346 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 GPR42O15529 346 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 TLR5O60602 858 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 BCAS2O75934 225 aaPredicted RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 SEC24AO95486 1093 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 RPS9P46781 194 aaKnown RBP12.6□□□□□ -0.39
RETREG3-201ENST00000309428 NPY2RP49146 381 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 NIPAL4Q0D2K0 466 aa12.6□□□□□ -0.39
RETREG3-201ENST00000309428 LAPTM5Q13571 262 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms