RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 TRIM59Q8IWR1 403 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 IQCKQ8N0W5 287 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 EMC1Q8N766 993 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 RTL3Q8N8U3 475 aaKnown RBP14.42□□□□□ -0.1
CLN3-249ENST00000636685 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.42□□□□□ -0.1
CLN3-249ENST00000636685 SEC14L1Q92503 715 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 SHC3Q92529 594 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 CRACR2AQ9BSW2 395 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 RUBCNLQ9H714 662 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 RMND1Q9NWS8 449 aa14.42□□□□□ -0.1
CLN3-249ENST00000636685 J3KR12 359 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 ZNF185O15231 689 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 LRRTM2O43300 516 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 C9P02748 559 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 MT-ND3P03897 115 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 FGF5P12034 268 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 PTPN4P29074 926 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 BCL2L1Q07817 233 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 LAMB3Q13751 1172 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 PKP1Q13835 747 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 HSD11B1LQ7Z5J1 315 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 SYVN1Q86TM6 617 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 TRIM74Q86UV6 250 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 HPS6Q86YV9 775 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 CCDC185Q8N715 623 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 TSEN2Q8NCE0 465 aaKnown RBP14.41□□□□□ -0.1
CLN3-249ENST00000636685 SH3KBP1Q96B97 665 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 DTD2Q96FN9 168 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 NSMCE3Q96MG7 304 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 TGM7Q96PF1 710 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 STN1Q9H668 368 aaKnown RBP14.41□□□□□ -0.1
CLN3-249ENST00000636685 PDFQ9HBH1 243 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 OGFRQ9NZT2 677 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 PCYT1BQ9Y5K3 369 aaPredicted RBP14.41□□□□□ -0.1
CLN3-249ENST00000636685 DCHS2Q6V1P9 2916 aa14.41□□□□□ -0.1
CLN3-249ENST00000636685 ZG16O60844 167 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 PNMA6AP0CW24 399 aaPredicted RBP14.4□□□□□ -0.1
CLN3-249ENST00000636685 SLC9A1P19634 815 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 CLCN1P35523 988 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 YBEYP58557 167 aaPredicted RBP14.4□□□□□ -0.1
CLN3-249ENST00000636685 POLR2LP62875 67 aaKnown RBP14.4□□□□□ -0.1
CLN3-249ENST00000636685 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLN3-249ENST00000636685 IYDQ6PHW0 289 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 MYO7BQ6PIF6 2116 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 TRIM65Q6PJ69 517 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 GALNT13Q8IUC8 556 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 PYROXD2Q8N2H3 581 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 TMEM35BQ8NCS4 154 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 SPATA32Q96LK8 384 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 GPR87Q9BY21 358 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 CNOT8Q9UFF9 292 aaKnown RBP14.4□□□□□ -0.1
CLN3-249ENST00000636685 TBC1D29Q9UFV1 150 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 AJAP1Q9UKB5 411 aaPredicted RBP14.4□□□□□ -0.1
CLN3-249ENST00000636685 PRKAB1Q9Y478 270 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLN3-249ENST00000636685 FBN3Q75N90 2809 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 FER1L5A0AVI2 2057 aa14.4□□□□□ -0.1
CLN3-249ENST00000636685 HEATR9A2RTY3 570 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 K7ELQ4 463 aaPredicted RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 TRAFD1O14545 582 aaPredicted RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 HEXIM1O94992 359 aaKnown RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 CD44P16070 742 aaKnown RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 TYRP1P17643 537 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 TEAD1P28347 426 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 EPHB2P29323 1055 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 CSNK1DP48730 415 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 PER3P56645 1201 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 RPS15P62841 145 aaKnown RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 RAPSNQ13702 412 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 PARP15Q460N3 678 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 Q6ZVL8 140 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 SLC9B2Q86UD5 537 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 PPP1R3BQ86XI6 285 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 CBARPQ8N350 705 aaPredicted RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 EPB41L1Q9H4G0 881 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 METTL5Q9NRN9 209 aaKnown RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 G3BP2Q9UN86 482 aaKnown RBP14.39□□□□□ -0.11
CLN3-249ENST00000636685 NTNG1Q9Y2I2 539 aa14.39□□□□□ -0.11
CLN3-249ENST00000636685 PCSK5Q92824 1860 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 F5H423 210 aaPredicted RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 PSMA7O14818 248 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 KIF1CO43896 1103 aaKnown RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 SNX2O60749 519 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 RASSF9O75901 435 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 SOD1P00441 154 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 TNFAIP3P21580 790 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 VIPR1P32241 457 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 CDH5P33151 784 aaPredicted RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 GPR1P46091 355 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 MARSP56192 900 aaKnown RBP14.38□□□□□ -0.11
CLN3-249ENST00000636685 LRP8Q14114 963 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 PTPRRQ15256 657 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 CCDC14Q49A88 953 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 PWWP2BQ6NUJ5 590 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 TTI2Q6NXR4 508 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 RFLNAQ6ZTI6 216 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 GDF7Q7Z4P5 450 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 ADAMTS17Q8TE56 1095 aa14.38□□□□□ -0.11
CLN3-249ENST00000636685 RXFP2Q8WXD0 754 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms