RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TMEM98Q9Y2Y6 226 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 PCDHB1Q9Y5F3 818 aa14.72□□□□□ -0.05
USP28-204ENST00000537642 ANKRD11Q6UB99 2663 aaPredicted RBP14.72□□□□□ -0.05
USP28-204ENST00000537642 SCN8AQ9UQD0 1980 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 KIF26BQ2KJY2 2108 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 FADS2P1A8MWK0 482 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 F5H423 210 aaPredicted RBP14.71□□□□□ -0.05
USP28-204ENST00000537642 INPP4BO15327 924 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 NOBOXO60393 691 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 CSO75390 466 aaKnown RBP14.71□□□□□ -0.05
USP28-204ENST00000537642 PYGMP11217 842 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 OTUD4Q01804 1114 aaKnown RBP14.71□□□□□ -0.05
USP28-204ENST00000537642 KIF5AQ12840 1032 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 PID1Q7Z2X4 250 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 ACTL9Q8TC94 416 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 CCDC74AQ96AQ1 378 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 OXNAD1Q96HP4 312 aaPredicted RBP14.71□□□□□ -0.05
USP28-204ENST00000537642 VAT1Q99536 393 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 CCDC3Q9BQI4 270 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 FAM83DQ9H4H8 585 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 ZFYVE1Q9HBF4 777 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 SPATS2LQ9NUQ6 558 aaKnown RBP14.71□□□□□ -0.05
USP28-204ENST00000537642 FAM153AQ9UHL3 310 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 AMFRQ9UKV5 643 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 SHOC2Q9UQ13 582 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 ZNF711Q9Y462 761 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 ST14Q9Y5Y6 855 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 OAS3Q9Y6K5 1087 aaKnown RBP14.71□□□□□ -0.05
USP28-204ENST00000537642 UNC13CQ8NB66 2214 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 PKD1L2Q7Z442 2459 aa14.71□□□□□ -0.05
USP28-204ENST00000537642 CFAP47Q6ZTR5 3102 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 ZFHX4Q86UP3 3567 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 LOC285095A0A1B0GVY8 99 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 RGSL1A5PLK6 1076 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 B4DGG1 531 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 H7C0C1 242 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 AK4P27144 223 aaPredicted RBP14.7□□□□□ -0.06
USP28-204ENST00000537642 RBL1P28749 1068 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 ADCY8P40145 1251 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 ATP5OP48047 213 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 WNT3AP56704 352 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 CTBSQ01459 385 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 CCDC181Q5TID7 509 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 PEX26Q7Z412 305 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 TMC3Q7Z5M5 1100 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 TXLNBQ8N3L3 684 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 MRGPRX2Q96LB1 330 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 FCRL5Q96RD9 977 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 FAM118BQ9BPY3 351 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 GSDMCQ9BYG8 508 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 DPEP2Q9H4A9 486 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 PACSIN2Q9UNF0 486 aaPredicted RBP14.7□□□□□ -0.06
USP28-204ENST00000537642 RAXQ9Y2V3 346 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 PLEKHM1Q9Y4G2 1056 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 SPO11Q9Y5K1 396 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 AK5Q9Y6K8 562 aa14.7□□□□□ -0.06
USP28-204ENST00000537642 GOLGA6L6A8MZA4 724 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 NTN3O00634 580 aaPredicted RBP14.69□□□□□ -0.06
USP28-204ENST00000537642 AURKAO14965 403 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 DDX3YO15523 660 aaKnown RBP14.69□□□□□ -0.06
USP28-204ENST00000537642 FTCDO95954 541 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 SLC4A1P02730 911 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 EIF3EP60228 445 aaKnown RBP14.69□□□□□ -0.06
USP28-204ENST00000537642 ILF3Q12906 894 aaKnown RBP eCLIP14.69□□□□□ -0.06
USP28-204ENST00000537642 HLTFQ14527 1009 aaKnown RBP eCLIP14.69□□□□□ -0.06
USP28-204ENST00000537642 ISXQ2M1V0 245 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 C14orf28Q4W4Y0 310 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 PYCR3Q53H96 274 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 CERCAMQ5T4B2 595 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 CCDC70Q6NSX1 233 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 RBM44Q6ZP01 1051 aaKnown RBP14.69□□□□□ -0.06
USP28-204ENST00000537642 MARK2Q7KZI7 788 aaKnown RBP14.69□□□□□ -0.06
USP28-204ENST00000537642 SYCE1Q8N0S2 351 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 GPR26Q8NDV2 337 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 OR6C4Q8NGE1 309 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 OR2M4Q96R27 311 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 GPR63Q9BZJ6 419 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 TAAR2Q9P1P5 351 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 TRHDEQ9UKU6 1024 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 GPSM3Q9Y4H4 160 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 PCYT1BQ9Y5K3 369 aaPredicted RBP14.69□□□□□ -0.06
USP28-204ENST00000537642 CAPN6Q9Y6Q1 641 aa14.69□□□□□ -0.06
USP28-204ENST00000537642 BRINP1O60477 761 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 USP12O75317 370 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 TCEA3O75764 348 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 ASMTLO95671 621 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 EPOP01588 193 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 ATP1A1P05023 1023 aaKnown RBP14.68□□□□□ -0.06
USP28-204ENST00000537642 FGF1P05230 155 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 RBP3P10745 1247 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 GLB1P16278 677 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 CETN2P41208 172 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 CHRNA4P43681 627 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 PDX1P52945 283 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 GSDMDP57764 484 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 DCDC1P59894 354 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 CCL7P80098 99 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 SIRPB2Q5JXA9 342 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 ALS2CLQ60I27 953 aa14.68□□□□□ -0.06
USP28-204ENST00000537642 SLC30A9Q6PML9 568 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms