RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 C12orf43Q96C57 262 aaKnown RBP16.08■□□□□ 0.16
PCDH1-203ENST00000394536 FAM120BQ96EK7 910 aaKnown RBP16.08■□□□□ 0.16
PCDH1-203ENST00000394536 MRGPRX2Q96LB1 330 aa16.08■□□□□ 0.16
PCDH1-203ENST00000394536 VPS45Q9NRW7 570 aa16.08■□□□□ 0.16
PCDH1-203ENST00000394536 DNAAF2Q9NVR5 837 aaKnown RBP16.08■□□□□ 0.16
PCDH1-203ENST00000394536 USP3Q9Y6I4 520 aa16.08■□□□□ 0.16
PCDH1-203ENST00000394536 ATAD5Q96QE3 1844 aa16.08■□□□□ 0.16
PCDH1-203ENST00000394536 GPR32O75388 356 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ALOX15P16050 662 aaPredicted RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CDH2P19022 906 aaPredicted RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CCNA2P20248 432 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 PCSK6P29122 969 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CLK1P49759 484 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 RGS4P49798 205 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 NDST2P52849 883 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 MCCD1P59942 119 aaPredicted RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 HERVK_113P63132 956 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 RPL38P63173 70 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ZBTB6Q15916 424 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 TECRLQ5HYJ1 363 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ERI1Q8IV48 349 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 NPLOC4Q8TAT6 608 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 PTCD2Q8WV60 388 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ERVK-6Q9BXR3 956 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 OSBPL6Q9BZF3 934 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CLPBQ9H078 707 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 MIOSQ9NXC5 875 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 DAPK2Q9UIK4 370 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 SQORQ9Y6N5 450 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CROCCQ5TZA2 2017 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 FYNP06241 537 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 HAPLN1P10915 354 aaPredicted RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 PCBP1Q15365 356 aaKnown RBP eCLIP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CCL14Q16627 93 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ZNF792Q3KQV3 632 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 PLD3Q8IV08 490 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 OR7D4Q8NG98 312 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 SEPT8Q92599 483 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 FBXO44Q9H4M3 255 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 FANCEQ9HB96 536 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 EIF2B4Q9UI10 523 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 HS3ST4Q9Y661 456 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CYBBP04839 570 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 GSK3BP49841 420 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 POLR2JP52435 117 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 HUNKP57058 714 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 LCP2Q13094 533 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 C11orf91Q3C1V1 193 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CILP2Q8IUL8 1156 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 C8orf59Q8N0T1 100 aaPredicted RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 METTL25Q8N6Q8 603 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 SMG8Q8ND04 991 aaKnown RBP16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ZMIZ2Q8NF64 920 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 ACTR8Q9H981 624 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 EBF1Q9UH73 591 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 CRLS1Q9UJA2 301 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 PADI3Q9ULW8 664 aa16.07■□□□□ 0.16
PCDH1-203ENST00000394536 DOCK5Q9H7D0 1870 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CDC7O00311 574 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SLC7A4O43246 635 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 MAFKO60675 156 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 KCNH1O95259 989 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CST1P01037 141 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 GSNP06396 782 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 RHOCP08134 193 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CNPP09543 421 aaKnown RBP16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CDKN2DP55273 166 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 TRAP1Q12931 704 aaKnown RBP16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SIRPB2Q5JXA9 342 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SNX19Q92543 992 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 ASPSCR1Q9BZE9 553 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SELENONQ9NZV5 590 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 INVSQ9Y283 1065 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 PCDHB5Q9Y5E4 795 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 TOR1BO14657 336 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 VILLO15195 856 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 PRSS56P0CW18 603 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CYP4B1P13584 511 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SLC5A2P31639 672 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 DGKQP52824 942 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 UFM1P61960 85 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 ERMP1Q7Z2K6 904 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 MON1AQ86VX9 555 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CROCCP3Q8IVE0 287 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 TBC1D21Q8IYX1 336 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 OR6K2Q8NGY2 324 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 LRCH3Q96II8 777 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 TM6SF2Q9BZW4 377 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 RIBC2Q9H4K1 309 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 ZNF696Q9H7X3 374 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 PARVBQ9HBI1 364 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 KIF13BQ9NQT8 1826 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CFAP99D6REC4 459 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 NOBOXO60393 691 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 ACVRL1P37023 503 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 POLD2P49005 469 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 TAF10Q12962 218 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 MAPKAPK3Q16644 382 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 CLEC14AQ86T13 490 aa16.06■□□□□ 0.16
PCDH1-203ENST00000394536 SLC15A3Q8IY34 581 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms