RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 GABBR2O75899 941 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 VTNP04004 478 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 IL1R1P14778 569 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 SHQ1Q6PI26 577 aaKnown RBP12.8□□□□□ -0.36
USP47-202ENST00000339865 SLC16A9Q7RTY1 509 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 OR10H4Q8NGA5 316 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 ACOT12Q8WYK0 555 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 MECRQ9BV79 373 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 NINJ2Q9NZG7 142 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 ABCD2Q9UBJ2 740 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 SEC16AO15027 2179 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 A0A1B0GVC2 190 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 LSM12Q3MHD2 195 aaKnown RBP12.8□□□□□ -0.36
USP47-202ENST00000339865 CTXN3Q4LDR2 81 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 MPP5Q8N3R9 675 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 L2HGDHQ9H9P8 463 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 TAS2R7Q9NYW3 318 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 RABL2BQ9UNT1 228 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 PCDHGC5Q9Y5F6 944 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 LAMC3Q9Y6N6 1575 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 RAPGEF6Q8TEU7 1601 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 SNX3O60493 162 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 CYP17A1P05093 508 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 NPTX2P47972 431 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 SLC5A3P53794 718 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 HERC3Q15034 1050 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 CPSF6Q16630 551 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP47-202ENST00000339865 TAPT1Q6NXT6 567 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 FBXL19Q6PCT2 694 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 RFKQ969G6 155 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 BRINP2Q9C0B6 783 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 TCF7L1Q9HCS4 588 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 CAPN8A6NHC0 703 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 RIIAD1A6NNX1 92 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 GSG1L2A8MUP6 293 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 CSF1RP07333 972 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 IDO1P14902 403 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 TBX4P57082 545 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 TLR1Q15399 786 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 COQ8AQ8NI60 647 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 C11orf16Q9NQ32 467 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 MAP2P11137 1827 aaKnown RBP12.8□□□□□ -0.36
USP47-202ENST00000339865 CIB4A0PJX0 185 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 URADA6NGE7 173 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 GNB3P16520 340 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 CXCR2P25025 360 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 ZNF135P52742 658 aaPredicted RBP12.8□□□□□ -0.36
USP47-202ENST00000339865 SCGB2A2Q13296 93 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 TMED8Q6PL24 325 aaPredicted RBP12.8□□□□□ -0.36
USP47-202ENST00000339865 XKRXQ6PP77 449 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 USP30Q70CQ3 517 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 P2RY8Q86VZ1 359 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 PCDHA11Q9Y5I1 949 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 PCYT1BQ9Y5K3 369 aaPredicted RBP12.8□□□□□ -0.36
USP47-202ENST00000339865 CPDO75976 1380 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 RORCP51449 518 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 PTPAQ15257 358 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 ARMC12Q5T9G4 340 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 SUSD4Q5VX71 490 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 C7orf57Q8NEG2 295 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 OR4C6Q8NH72 309 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 HDAC7Q8WUI4 952 aa12.8□□□□□ -0.36
USP47-202ENST00000339865 SHBGP04278 402 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 RASGEF1BQ0VAM2 473 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 ARFRP1Q13795 201 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 GPRIN3Q6ZVF9 776 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 GPR180Q86V85 440 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 SLITRK4Q8IW52 837 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 SNIP1Q8TAD8 396 aaKnown RBP12.79□□□□□ -0.36
USP47-202ENST00000339865 C16orf58Q96GQ5 468 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 TM9SF3Q9HD45 589 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 GPRC5CQ9NQ84 441 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 CYTH4Q9UIA0 394 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 PCM1Q15154 2024 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 MUSKO15146 869 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 PIAS1O75925 651 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 LTA4HP09960 611 aaKnown RBP12.79□□□□□ -0.36
USP47-202ENST00000339865 CYP2A6P11509 494 aaPredicted RBP12.79□□□□□ -0.36
USP47-202ENST00000339865 YBX3P16989 372 aaKnown RBP eCLIP12.79□□□□□ -0.36
USP47-202ENST00000339865 KCNJ5P48544 419 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 SIM2Q14190 667 aaPredicted RBP12.79□□□□□ -0.36
USP47-202ENST00000339865 LIPMQ5VYY2 423 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 ANO7Q6IWH7 933 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 LAPTM4BQ86VI4 370 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 TMEM161BQ8NDZ6 487 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 ZSWIM3Q96MP5 696 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 PGLYRP2Q96PD5 576 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 CGRRF1Q99675 332 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 ASB8Q9H765 288 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 ELOVL2Q9NXB9 296 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 SMPD4Q9NXE4 827 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 SPG21Q9NZD8 308 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 PROSCO94903 275 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 LHX1P48742 406 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 USP4Q13107 963 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 MFSD10Q14728 455 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 KCNT2Q6UVM3 1135 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 RALGPS2Q86X27 583 aaPredicted RBP12.79□□□□□ -0.36
USP47-202ENST00000339865 SPPL2CQ8IUH8 684 aa12.79□□□□□ -0.36
USP47-202ENST00000339865 KATNAL2Q8IYT4 538 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms