RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SNAI3Q3KNW1 292 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 OR7E24Q6IFN5 339 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 ATG16L2Q8NAA4 619 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 CNOT9Q92600 299 aaKnown RBP2.93□□□□□ -1.94
SMC4-220ENST00000488017 SDCCAG3Q96C92 435 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 C8orf48Q96LL4 319 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 FOXN4Q96NZ1 517 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 QRFPRQ96P65 431 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 SIN3AQ96ST3 1273 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 PCGF6Q9BYE7 350 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 BICC1Q9H694 974 aaKnown RBP2.93□□□□□ -1.94
SMC4-220ENST00000488017 MMP25Q9NPA2 562 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 CHPF2Q9P2E5 772 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 ACAD8Q9UKU7 415 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 SUFUQ9UMX1 484 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 PTPRCP08575 1304 aa2.93□□□□□ -1.94
SMC4-220ENST00000488017 AGRNO00468 2067 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 PABPN1LA6NDY0 278 aaKnown RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 HMX3A6NHT5 357 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 CLIC2O15247 247 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 PPM1GO15355 546 aaPredicted RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 NBPF7P0C2Y1 421 aaPredicted RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 POLR2CP19387 275 aaPredicted RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 MAP2K2P36507 400 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 NR2C2P49116 596 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 AARSP49588 968 aaKnown RBP eCLIP2.92□□□□□ -1.94
SMC4-220ENST00000488017 TUBB8Q3ZCM7 444 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 METTL2BQ6P1Q9 378 aaKnown RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 ZNF704Q6ZNC4 412 aaPredicted RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 SRLQ86TD4 932 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 NOXA1Q86UR1 476 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 ZNRF4Q8WWF5 429 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 METTL2AQ96IZ6 378 aaKnown RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 RMDN3Q96TC7 470 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 CLSTN3Q9BQT9 956 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 TWSG1Q9GZX9 223 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 LMAN2LQ9H0V9 348 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 DACT1Q9NYF0 836 aa2.92□□□□□ -1.94
SMC4-220ENST00000488017 TTC7AQ9ULT0 858 aaPredicted RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 EXOGQ9Y2C4 368 aaKnown RBP2.92□□□□□ -1.94
SMC4-220ENST00000488017 ZCWPW2A0A1B0GU75 182 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 TMEM202A6NGA9 273 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 KRTAP1-4P0C5Y4 121 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 CEACAM1P13688 526 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 BMXP51813 675 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 CHRNDQ07001 517 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 TBX2Q13207 712 aaPredicted RBP2.91□□□□□ -1.94
SMC4-220ENST00000488017 KIAA1644Q3SXP7 199 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 SGO1Q5FBB7 561 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 LRRC8EQ6NSJ5 796 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 LINC00612Q8N6U2 182 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 SENP5Q96HI0 755 aaPredicted RBP2.91□□□□□ -1.94
SMC4-220ENST00000488017 EPHX3Q9H6B9 360 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 BEX4Q9NWD9 120 aaPredicted RBP2.91□□□□□ -1.94
SMC4-220ENST00000488017 FBXO9Q9UK97 447 aaPredicted RBP2.91□□□□□ -1.94
SMC4-220ENST00000488017 ACSL5Q9ULC5 683 aa2.91□□□□□ -1.94
SMC4-220ENST00000488017 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.91□□□□□ -1.94
SMC4-220ENST00000488017 EDN1P05305 212 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 PLA2G4BP0C869 781 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 ACADSP16219 412 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 AHRP35869 848 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 CCR10P46092 362 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 FASLGP48023 281 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 FOXO1Q12778 655 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 PUM3Q15397 648 aaKnown RBP2.9□□□□□ -1.95
SMC4-220ENST00000488017 SLC45A4Q5BKX6 768 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 BRAT1Q6PJG6 821 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 FAM160B2Q86V87 743 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 SPATA6LQ8N4H0 392 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 OR2T6Q8NHC8 308 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 C18orf12Q96KH6 178 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 PCYT2Q99447 389 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.9□□□□□ -1.95
SMC4-220ENST00000488017 SLC32A1Q9H598 525 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 CHODLQ9H9P2 273 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 MAGEE1Q9HCI5 957 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 TMEM181Q9P2C4 612 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 PYGO1Q9Y3Y4 419 aa2.9□□□□□ -1.95
SMC4-220ENST00000488017 A0A1W2PPI3 338 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 A6NL46 340 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 SLCO1B7G3V0H7 640 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 PER2O15055 1255 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 PARNO95453 639 aaKnown RBP2.89□□□□□ -1.95
SMC4-220ENST00000488017 TSHBP01222 138 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 ARCN1P48444 511 aaKnown RBP2.89□□□□□ -1.95
SMC4-220ENST00000488017 AMPHP49418 695 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 PRKAA2P54646 552 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 PICALMQ13492 652 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 KIR2DS3Q14952 304 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 TCTN1Q2MV58 587 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 CTXN3Q4LDR2 81 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 SERTAD4-AS1Q5TG53 156 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 ZDHHC20Q5W0Z9 365 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 GGNBP1Q5YKI7 109 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 ZNF614Q8N883 585 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 GRHL3Q8TE85 626 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 GMPPAQ96IJ6 420 aaPredicted RBP2.89□□□□□ -1.95
SMC4-220ENST00000488017 CCDC136Q96JN2 1154 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 AGAP3Q96P47 875 aa2.89□□□□□ -1.95
SMC4-220ENST00000488017 PPP1R3EQ9H7J1 279 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms