RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 A3GALT2U3KPV4 340 aa13□□□□□ -0.33
MSH2-201ENST00000233146 MEIOCA2RUB1 952 aa13□□□□□ -0.33
MSH2-201ENST00000233146 ZNF487B1APH4 448 aa13□□□□□ -0.33
MSH2-201ENST00000233146 FAM86B1E9PN63 330 aa13□□□□□ -0.33
MSH2-201ENST00000233146 H0Y626 953 aa13□□□□□ -0.33
MSH2-201ENST00000233146 NME4O00746 187 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SNRPB2P08579 225 aaKnown RBP13□□□□□ -0.33
MSH2-201ENST00000233146 ZNF250P15622 560 aa13□□□□□ -0.33
MSH2-201ENST00000233146 TGFBR1P36897 503 aa13□□□□□ -0.33
MSH2-201ENST00000233146 GPR85P60893 370 aa13□□□□□ -0.33
MSH2-201ENST00000233146 TAP1Q03518 808 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SQLEQ14534 574 aa13□□□□□ -0.33
MSH2-201ENST00000233146 NOMO1Q15155 1222 aa13□□□□□ -0.33
MSH2-201ENST00000233146 LRRC26Q2I0M4 334 aa13□□□□□ -0.33
MSH2-201ENST00000233146 AGKQ53H12 422 aa13□□□□□ -0.33
MSH2-201ENST00000233146 TPRG1LQ5T0D9 272 aa13□□□□□ -0.33
MSH2-201ENST00000233146 GARNL3Q5VVW2 1013 aa13□□□□□ -0.33
MSH2-201ENST00000233146 XKRXQ6PP77 449 aa13□□□□□ -0.33
MSH2-201ENST00000233146 NRARPQ7Z6K4 114 aa13□□□□□ -0.33
MSH2-201ENST00000233146 ZHX1-C8orf76Q96EF9 292 aa13□□□□□ -0.33
MSH2-201ENST00000233146 MFSD3Q96ES6 412 aa13□□□□□ -0.33
MSH2-201ENST00000233146 LXNQ9BS40 222 aa13□□□□□ -0.33
MSH2-201ENST00000233146 ACSS2Q9NR19 701 aa13□□□□□ -0.33
MSH2-201ENST00000233146 TAS2R7Q9NYW3 318 aa13□□□□□ -0.33
MSH2-201ENST00000233146 CPNE7Q9UBL6 633 aa13□□□□□ -0.33
MSH2-201ENST00000233146 BTBD3Q9Y2F9 522 aa13□□□□□ -0.33
MSH2-201ENST00000233146 ZNF175Q9Y473 711 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SDHDO14521 159 aa13□□□□□ -0.33
MSH2-201ENST00000233146 NRP2O60462 931 aa13□□□□□ -0.33
MSH2-201ENST00000233146 LDLRP01130 860 aa13□□□□□ -0.33
MSH2-201ENST00000233146 AGXTP21549 392 aa13□□□□□ -0.33
MSH2-201ENST00000233146 CDH5P33151 784 aaPredicted RBP13□□□□□ -0.33
MSH2-201ENST00000233146 ALDH3A2P51648 485 aa13□□□□□ -0.33
MSH2-201ENST00000233146 ARSFP54793 590 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SLAMF1Q13291 335 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SEMA5AQ13591 1074 aa13□□□□□ -0.33
MSH2-201ENST00000233146 RIN1Q13671 783 aa13□□□□□ -0.33
MSH2-201ENST00000233146 FASTKQ14296 549 aaKnown RBP13□□□□□ -0.33
MSH2-201ENST00000233146 SNRNP35Q16560 246 aaKnown RBP13□□□□□ -0.33
MSH2-201ENST00000233146 CA9Q16790 459 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SV2AQ7L0J3 742 aa13□□□□□ -0.33
MSH2-201ENST00000233146 TBC1D21Q8IYX1 336 aa13□□□□□ -0.33
MSH2-201ENST00000233146 KCTD4Q8WVF5 259 aa13□□□□□ -0.33
MSH2-201ENST00000233146 TESCQ96BS2 214 aa13□□□□□ -0.33
MSH2-201ENST00000233146 NEDD4LQ96PU5 975 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SECISBP2Q96T21 854 aaKnown RBP13□□□□□ -0.33
MSH2-201ENST00000233146 NXF2Q9GZY0 626 aaKnown RBP13□□□□□ -0.33
MSH2-201ENST00000233146 NUAK2Q9H093 628 aa13□□□□□ -0.33
MSH2-201ENST00000233146 SDCBP2Q9H190 292 aa13□□□□□ -0.33
MSH2-201ENST00000233146 ZC4H2Q9NQZ6 224 aa13□□□□□ -0.33
MSH2-201ENST00000233146 EGFL7Q9UHF1 273 aa13□□□□□ -0.33
MSH2-201ENST00000233146 USP22Q9UPT9 525 aa13□□□□□ -0.33
MSH2-201ENST00000233146 NUP98P52948 1817 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 ZBTB5O15062 677 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 KRT7P08729 469 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 THRBP10828 461 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 HSD17B1P14061 328 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 DDCP20711 480 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 TGM2P21980 687 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 ATICP31939 592 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 CSTF2P33240 577 aaKnown RBP eCLIP12.99□□□□□ -0.33
MSH2-201ENST00000233146 TRAF3Q13114 568 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 SEMA3BQ13214 749 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 PLEKHG6Q3KR16 790 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 SYT6Q5T7P8 510 aaPredicted RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 KIAA1324Q6UXG2 1013 aaKnown RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 NPNTQ6UXI9 565 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 TRPM4Q8TD43 1214 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 ISL2Q96A47 359 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 KIFC3Q9BVG8 833 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 IL22Q9GZX6 179 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 VPS33BQ9H267 617 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 ABCD2Q9UBJ2 740 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 ZFC3H1O60293 1989 aaKnown RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 PTGES3LE9PB15 166 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 H3BQ06 376 aaPredicted RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 SLC1A7O00341 560 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 PPEF1O14829 653 aaPredicted RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 PRKCBP05771 671 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 RPS5P46782 204 aaKnown RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 GNPDA1P46926 289 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 GRIA4P48058 902 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 NPY2RP49146 381 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 LIG4P49917 911 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 GALEQ14376 348 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 NFE2L1Q14494 772 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 NFIXQ14938 502 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 VARS2Q5ST30 1063 aaKnown RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 OTUD3Q5T2D3 398 aaPredicted RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 ATF7IP2Q5U623 682 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 DNAJC24Q6P3W2 148 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 PRSS42Q7Z5A4 293 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 CMC1Q7Z7K0 106 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 ARFGAP1Q8N6T3 406 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 RPL3LQ92901 407 aaKnown RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 RTP4Q96DX8 246 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 AURKBQ96GD4 344 aaPredicted RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 P2RX7Q99572 595 aaKnown RBP12.99□□□□□ -0.33
MSH2-201ENST00000233146 CCDC90BQ9GZT6 254 aa12.99□□□□□ -0.33
MSH2-201ENST00000233146 MCCC2Q9HCC0 563 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms