RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CORO1AP31146 461 aaKnown RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 EIF2S3P41091 472 aaKnown RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 AMPHP49418 695 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 PRKAA2P54646 552 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 ISL1P61371 349 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 VEPH1Q14D04 833 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 CTXN3Q4LDR2 81 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 FAM171BQ6P995 826 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 BEST2Q8NFU1 509 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 PIGTQ969N2 578 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 SDCCAG3Q96C92 435 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 CD180Q99467 661 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 CMKLR1Q99788 373 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 SH3GL2Q99962 352 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 CDK19Q9BWU1 502 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 CCDC177Q9NQR7 707 aaPredicted RBP2.67□□□□□ -1.98
NUP54-208ENST00000508604 POLG2Q9UHN1 485 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 GDAQ9Y2T3 454 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 DERAQ9Y315 318 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 DAAM1Q9Y4D1 1078 aa2.67□□□□□ -1.98
NUP54-208ENST00000508604 H7C423 109 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 TCERG1O14776 1098 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 KLK8O60259 260 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 POLR2CP19387 275 aaPredicted RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 BDKRB2P30411 391 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 HOXC8P31273 242 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 MRPS5P82675 430 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 CHRNDQ07001 517 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 UGP2Q16851 508 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 LCE3EQ5T5B0 92 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 METTL2BQ6P1Q9 378 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 MTSS1LQ765P7 747 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 TRPT1Q86TN4 253 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 FAM160B2Q86V87 743 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 TMTC1Q8IUR5 882 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 FOXRED2Q8IWF2 684 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 ZCCHC9Q8N567 271 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 NOC3LQ8WTT2 800 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 METTL2AQ96IZ6 378 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 MCRIP2Q9BUT9 160 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 PCGF6Q9BYE7 350 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 NUF2Q9BZD4 464 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 FGF22Q9HCT0 170 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 ALKBH4Q9NXW9 302 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 STON1Q9Y6Q2 735 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 PER2O15055 1255 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 BCAT2O15382 392 aaPredicted RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 ZNF821O75541 412 aaPredicted RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 ERVK-10P10266 1014 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 DDIT3P35638 169 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 KRTAP12-2P59991 146 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 TIGD6Q17RP2 521 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 DDHD1Q8NEL9 900 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 LINGO1Q96FE5 620 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 POM121L2Q96KW2 1035 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 QRFPRQ96P65 431 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 VGLL1Q99990 258 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 RBM4BQ9BQ04 359 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 ELAC2Q9BQ52 826 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 BICC1Q9H694 974 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 EPHX3Q9H6B9 360 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 MKKSQ9NPJ1 570 aaPredicted RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 MRPS28Q9Y2Q9 187 aaKnown RBP2.66□□□□□ -1.98
NUP54-208ENST00000508604 ZHX2Q9Y6X8 837 aa2.66□□□□□ -1.98
NUP54-208ENST00000508604 COL5A2P05997 1499 aaPredicted RBP2.65□□□□□ -1.98
NUP54-208ENST00000508604 SHROOM4Q9ULL8 1493 aa2.65□□□□□ -1.98
NUP54-208ENST00000508604 PABPN1LA6NDY0 278 aaKnown RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 STX16-NPEPL1H3BU86 382 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 STX16O14662 325 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 DCXO43602 365 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 MYL1P05976 194 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 ZNF23P17027 643 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 CLDN2P57739 230 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 FOXO1Q12778 655 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 TMEM187Q14656 261 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 TCTN1Q2MV58 587 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 EIF2S3LQ2VIR3 472 aaKnown RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 SLC45A4Q5BKX6 768 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 FAM83BQ5T0W9 1011 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 SERTAD4-AS1Q5TG53 156 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 OR7E24Q6IFN5 339 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 FAM53AQ6NSI3 398 aaPredicted RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 LRRC8EQ6NSJ5 796 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 LINGO2Q7L985 606 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 TMEM57Q8N5G2 664 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 TRIM58Q8NG06 486 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 ZNF473Q8WTR7 871 aaKnown RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 WDR12Q9GZL7 423 aaKnown RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 NDST4Q9H3R1 872 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 ESRP2Q9H6T0 727 aaKnown RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 BPIFA1Q9NP55 256 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 C2orf42Q9NWW7 574 aa2.65□□□□□ -1.99
NUP54-208ENST00000508604 FBXO9Q9UK97 447 aaPredicted RBP2.65□□□□□ -1.99
NUP54-208ENST00000508604 TMEM202A6NGA9 273 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 CSTBP04080 98 aaKnown RBP2.64□□□□□ -1.99
NUP54-208ENST00000508604 MAOAP21397 527 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 KRT9P35527 623 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 METAP2P50579 478 aaKnown RBP eCLIP2.64□□□□□ -1.99
NUP54-208ENST00000508604 BLMHQ13867 455 aa2.64□□□□□ -1.99
NUP54-208ENST00000508604 NAA25Q14CX7 972 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms