RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 GAB3Q8WWW8 586 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 PROX1Q92786 737 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 HIPK3Q9H422 1215 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 TAS2R13Q9NYV9 303 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 POLG2Q9UHN1 485 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ADGRE2Q9UHX3 823 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 LEF1Q9UJU2 399 aaPredicted RBP13.52□□□□□ -0.25
USP42-206ENST00000479544 B4GALT4O60513 344 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 GNAO1P09471 354 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 PRKACGP22612 351 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ICAM3P32942 547 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 SOX6P35712 828 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 CAPGP40121 348 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ECT2LQ008S8 904 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ZNF829Q3KNS6 432 aaPredicted RBP13.52□□□□□ -0.25
USP42-206ENST00000479544 KIAA1841Q6NSI8 718 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 TMEM53Q6P2H8 277 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 HS6ST3Q8IZP7 471 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 TWIST2Q8WVJ9 160 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 ZBTB26Q9HCK0 441 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 SACM1LQ9NTJ5 587 aa13.52□□□□□ -0.25
USP42-206ENST00000479544 C9IYK1 514 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 UBXN8O00124 270 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SNAP29O95721 258 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 AHSGP02765 367 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 PTPRAP18433 802 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 ARL2P36404 184 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 GJA9P57773 515 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 CSTF3Q12996 717 aaKnown RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 ARMCX4Q5H9R4 360 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 OGFRL1Q5TC84 451 aaPredicted RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 FKBP1CQ5VVH2 108 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 PKN3Q6P5Z2 889 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 AHSA2Q719I0 299 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SLC7A5P1Q8MH63 180 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 CPSF7Q8N684 471 aaKnown RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 NODALQ96S42 347 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SEPT5Q99719 369 aaPredicted RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 IGSF9Q9P2J2 1179 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 A0A087X1B8 175 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 TTC24A2A3L6 582 aaPredicted RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 POMCP01189 267 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 BCAP31P51572 246 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SP2Q02086 613 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SLC10A2Q12908 348 aaPredicted RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 PTPRNQ16849 979 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 DNAJB3Q8WWF6 145 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 NXF3Q9H4D5 531 aaKnown RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 PDGFCQ9NRA1 345 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 CREBZFQ9NS37 354 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SPASTQ9UBP0 616 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SLC2A6Q9UGQ3 507 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SH3PXD2BA1X283 911 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 MSI1O43347 362 aaKnown RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 B4GAT1O43505 415 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SLC22A3O75751 556 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 PGLSO95336 258 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 HIST1H2AGP0C0S8 130 aaPredicted RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 NPR3P17342 541 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 HIST1H2ADP20671 130 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SOAT1P35610 550 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 BNIP2Q12982 314 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 TAB1Q15750 504 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 CCNYL2Q5T2Q4 361 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 SYPL2Q5VXT5 272 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 EFL1Q7Z2Z2 1120 aaKnown RBP13.51□□□□□ -0.25
USP42-206ENST00000479544 ADGRG6Q86SQ4 1221 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 LPCAT1Q8NF37 534 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 HIST1H2AHQ96KK5 128 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 B3GALT6Q96L58 329 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 TBATAQ96M53 351 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 HIST1H2AJQ99878 128 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 H2AFJQ9BTM1 129 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 PRRG3Q9BZD7 231 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 MUC3BQ9H195 1237 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 MINDY3Q9H8M7 445 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 ZNF112Q9UJU3 913 aa13.51□□□□□ -0.25
USP42-206ENST00000479544 CENPXA8MT69 81 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 A8MU76 341 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 PPEF2O14830 753 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 PRIM2P49643 509 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 PITX1P78337 314 aaPredicted RBP13.5□□□□□ -0.25
USP42-206ENST00000479544 SDHAF4Q5VUM1 108 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 ADHFE1Q8IWW8 467 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 DNERQ8NFT8 737 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 KLHL32Q96NJ5 620 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 TRIM54Q9BYV2 358 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 PTGDR2Q9Y5Y4 395 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 C4AP0C0L4 1744 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 MDM4O15151 490 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 ANGPTL1O95841 491 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 ARSAP15289 507 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 RXRGP48443 463 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 RAB39AQ14964 217 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 SLC25A52Q3SY17 297 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 OR2T12Q8NG77 320 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 RDH11Q8TC12 318 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 FCRL3Q96P31 734 aaPredicted RBP13.5□□□□□ -0.25
USP42-206ENST00000479544 PDE10AQ9Y233 779 aa13.5□□□□□ -0.25
USP42-206ENST00000479544 FMO3P31513 532 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms