RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AARDQ4LEZ3 155 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SPIN3Q5JUX0 258 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 IRF2BPLQ9H1B7 796 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 FBXL21Q9UKT6 434 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ACTL7BQ9Y614 415 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 RHPN2P1A8MT19 583 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 FADS2P1A8MWK0 482 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SCGB2A1O75556 95 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ITGB1P05556 798 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 VDRP11473 427 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 FUKQ8N0W3 1084 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 ABCC10Q5T3U5 1492 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC12A8A0AV02 714 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 LTA4HP09960 611 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 GZMAP12544 262 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 RPS9P46781 194 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 RIPPLY1Q0D2K3 151 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 PTPAQ15257 358 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 HSD17B12Q53GQ0 312 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 SLC44A3Q8N4M1 653 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 CPNE2Q96FN4 548 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 MASTLQ96GX5 879 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 WDR37Q9Y2I8 494 aa13.33□□□□□ -0.28
CCDC88A-204ENST00000413716 KDM5CP41229 1560 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PDYNP01213 254 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ITPKBP27987 946 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 MAGEA8P43361 318 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 RAB5BP61020 215 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 HERC3Q15034 1050 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 BRMS1LQ5PSV4 323 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 IDNKQ5T6J7 187 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 IQSEC1Q6DN90 963 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ZBTB46Q86UZ6 589 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 TOP1MTQ969P6 601 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ERGIC2Q96RQ1 377 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 RGCCQ9H4X1 137 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 FOXN1O15353 648 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 NARSO43776 548 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PRAMEF1O95521 474 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 AZGP1P25311 298 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 TLE2Q04725 743 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 LARS2Q15031 903 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM189A2Q15884 450 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ALG1LQ6GMV1 187 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 APTXQ7Z2E3 356 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNF550Q7Z398 422 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 TM9SF3Q9HD45 589 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PIGNO95427 931 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM228BP0C875 321 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 BCL2L1Q07817 233 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 NAE1Q13564 534 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 UBAP2LQ14157 1087 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ZCCHC23Q6ZST2 131 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 FAM13CQ8NE31 585 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 SPATA22Q8NHS9 363 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 OMDQ99983 421 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDHB12Q9Y5F1 795 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 AIREO43918 545 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 P2RY8Q86VZ1 359 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 HDAC2Q92769 488 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 KAT2AQ92830 837 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ANKRA2Q9H9E1 313 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 TRPV2Q9Y5S1 764 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PDE4DIPQ5VU43 2346 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 TULP3O75386 442 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 OTCP00480 354 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 RPLP2P05387 115 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ACSL1P33121 698 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 MMP13P45452 471 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 SPP2Q13103 211 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 AP5B1Q2VPB7 878 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 GPRIN3Q6ZVF9 776 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 MPP5Q8N3R9 675 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PNPT1Q8TCS8 783 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ZNHIT2Q9UHR6 403 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 SPHKAPQ2M3C7 1700 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 CATP04040 527 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 CTXN3Q4LDR2 81 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ATAD3CQ5T2N8 411 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ARMC12Q5T9G4 340 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 FBXL19Q6PCT2 694 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 TFAP2DQ7Z6R9 452 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 IL1RAPQ9NPH3 570 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 MTMR4Q9NYA4 1195 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 MRPS33Q9Y291 106 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 CHD4Q14839 1912 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 HBP1O60381 514 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 THPOP40225 353 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 PPP3CAQ08209 521 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 CARTPTQ16568 116 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ZDHHC17Q8IUH5 632 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 NKAPQ8N5F7 415 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 AGAP11Q8TF27 550 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 C19orf12Q9NSK7 152 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 ATP7BP35670 1465 aa13.32□□□□□ -0.28
CCDC88A-204ENST00000413716 NRP2O60462 931 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 UNC5CO95185 931 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 YES1P07947 543 aa13.31□□□□□ -0.28
CCDC88A-204ENST00000413716 PCDH1Q08174 1060 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms