RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 KLF8O95600 359 aaPredicted RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 CLDN1O95832 211 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 PARP1P09874 1014 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 KELP23276 732 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 CALRP27797 417 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 CHKAP35790 457 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 GPR3P46089 330 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 UQCRFS1P47985 274 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 RXRGP48443 463 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 SCAND1P57086 179 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 KRTAP10-6P60371 365 aaPredicted RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TUBA4AP68366 448 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 IL9RQ01113 521 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ROR1Q01973 937 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TWF1Q12792 350 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 DRP2Q13474 957 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 SEMA5AQ13591 1074 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF267Q14586 743 aaPredicted RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ACAP2Q15057 778 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ANO4Q32M45 955 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ALDH1L2Q3SY69 923 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TUBB8Q3ZCM7 444 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ASPRV1Q53RT3 343 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 WDR45BQ5MNZ6 344 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 INTS11Q5TA45 600 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 SWSAP1Q6NVH7 229 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TLDC1Q6P9B6 456 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 DARS2Q6PI48 645 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 USP17L6PQ6QN14 398 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 KDM7AQ6ZMT4 941 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ERC1Q8IUD2 1116 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 LSMEM2Q8N112 164 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 MIER2Q8N344 545 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ALLCQ8N6M5 410 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF461Q8TAF7 563 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 WASF1Q92558 559 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 HPS3Q969F9 1004 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 RPL36ALQ969Q0 106 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TBCBQ99426 244 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ACO2Q99798 780 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 QRSL1Q9H0R6 528 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 MYLK2Q9H1R3 596 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TMEM60Q9H2L4 133 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 UBN1Q9NPG3 1134 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 DMRT3Q9NQL9 472 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 ECHDC1Q9NTX5 307 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 AGPAT5Q9NUQ2 364 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 CALCOCO1Q9P1Z2 691 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TBX20Q9UMR3 447 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 RUVBL1Q9Y265 456 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 HES2Q9Y543 173 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 PCDHB1Q9Y5F3 818 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 UBIAD1Q9Y5Z9 338 aa4.61□□□□□ -1.67
LINC00540-201ENST00000611481 TDRD15B5MCY1 1934 aaKnown RBP4.61□□□□□ -1.67
LINC00540-201ENST00000611481 LRRK1Q38SD2 2015 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 RP1L1Q8IWN7 2480 aaPredicted RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 IGHV1OR15-9A0A0B4J2B8 117 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 A0A1B0GVT2 93 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 MEI4A8MW99 385 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 FAM227AF5H4B4 570 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 hCG_1984214I3L0E3 225 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 K7EQS6 105 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 KIAA0391O15091 583 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 RNF113AO15541 343 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 NDUFS2O75306 463 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 TUSC2O75896 110 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 CCNE2O96020 404 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 CHRM2P08172 466 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 GSPT1P15170 499 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 GATA3P23771 443 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 KIF5BP33176 963 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ACADVLP49748 655 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ADKP55263 362 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ERVPABLB-1P60509 514 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ELAVL2Q12926 359 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 MALLQ13021 153 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 TOMM20Q15388 145 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 FAM133BQ5BKY9 247 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 SUMO4Q6EEV6 95 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 KRTAP5-11Q6L8G4 156 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 RINLQ6ZS11 566 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 SDR16C5Q8N3Y7 309 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ZBTB34Q8NCN2 500 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 NLGN4YQ8NFZ3 816 aaPredicted RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 CUL5Q93034 780 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 MIB2Q96AX9 1013 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 SGF29Q96ES7 293 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 C1GALT1C1Q96EU7 318 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF419Q96HQ0 510 aaPredicted RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 CNDP2Q96KP4 475 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ZNF48Q96MX3 618 aaPredicted RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 SERINC2Q96SA4 455 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 MMS19Q96T76 1030 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 MAP3K14Q99558 947 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 EIF2AK1Q9BQI3 630 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 NUP62CLQ9H1M0 184 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ZDHHC4Q9NPG8 344 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 THSD1Q9NS62 852 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 DONSONQ9NYP3 566 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms