RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RFX6Q8HWS3 928 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 UNC5BQ8IZJ1 945 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PARP8Q8N3A8 854 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 BEND7Q8N7W2 519 aaPredicted RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 ANKFN1Q8N957 763 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PCSK9Q8NBP7 692 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 FIG4Q92562 907 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 CNDP2Q96KP4 475 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 UHRF1Q96T88 793 aaPredicted RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 EFCAB1Q9HAE3 211 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLK3-206ENST00000562078 COPG2Q9UBF2 871 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 GTF2IRD1Q9UHL9 959 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 UBQLN1Q9UMX0 589 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 ARIH1Q9Y4X5 557 aaPredicted RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 CDY2AQ9Y6F7 541 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 CDY1Q9Y6F8 540 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PCM1Q15154 2024 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 E7ENX8 843 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 BCAS1O75363 584 aaPredicted RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 UGT2B4P06133 528 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 NCAM1P13591 858 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 AXLP30530 894 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 GRK4P32298 578 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PRMT2P55345 433 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 GNG2P59768 71 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 MMRN1Q13201 1228 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 TAZQ16635 292 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PKDCCQ504Y2 493 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 FBXO47Q5MNV8 452 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 KIAA0408Q6ZU52 694 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 TNS4Q8IZW8 715 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 NAT16Q8N8M0 369 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 MFSD2AQ8NA29 543 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 TDRD5Q8NAT2 981 aaKnown RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 KLHDC9Q8NEP7 349 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 TCF12Q99081 682 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 COQ7Q99807 217 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 HMX1Q9NP08 348 aaPredicted RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 TMEM216Q9P0N5 145 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 IFT80Q9P2H3 777 aaPredicted RBP13.33□□□□□ -0.28
CLK3-206ENST00000562078 ENPP5Q9UJA9 477 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 PTCH2Q9Y6C5 1203 aa13.33□□□□□ -0.28
CLK3-206ENST00000562078 SMIM28A0A1B0GU29 152 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 TRDMT1O14717 391 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 PHGDHO43175 533 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 SYNCRIPO60506 623 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 BMP4P12644 408 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 NKX3-2P78367 333 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 UBXN11Q5T124 520 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 GTF2IRD2BQ6EKJ0 949 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 GDF6Q6KF10 455 aaPredicted RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 GTF2IRD2Q86UP8 949 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 ARMC8Q8IUR7 673 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 ELMOD2Q8IZ81 293 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 ZCCHC7Q8N3Z6 543 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 MFSD4AQ8N468 514 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 LSMEM1Q8N8F7 131 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 DEPDC1BQ8WUY9 529 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 MAGEE1Q9HCI5 957 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 WDR6Q9NNW5 1121 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 CCDC177Q9NQR7 707 aaPredicted RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 RAB6BQ9NRW1 208 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLK3-206ENST00000562078 PCDHB12Q9Y5F1 795 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 DYRK3O43781 588 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 GLRA3O75311 464 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 BMP2P12643 396 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 CST5P28325 142 aaPredicted RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 HOXC8P31273 242 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 PLA2G16P53816 162 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 CDH6P55285 790 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 PSME3P61289 254 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 PPP2R2BQ00005 443 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 SOX4Q06945 474 aaPredicted RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 DLG2Q15700 870 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 SNAP47Q5SQN1 464 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 XAF1Q6GPH4 301 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 TAF2Q6P1X5 1199 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 CAND1Q86VP6 1230 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 SCUBE3Q8IX30 993 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 ASCC1Q8N9N2 400 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 CANT1Q8WVQ1 401 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 B3GNT5Q9BYG0 378 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 IRF2BPLQ9H1B7 796 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 NGRNQ9NPE2 291 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 SUCOQ9UBS9 1254 aaKnown RBP13.32□□□□□ -0.28
CLK3-206ENST00000562078 PCDHGA7Q9Y5G6 932 aa13.32□□□□□ -0.28
CLK3-206ENST00000562078 RNF103-CHMP3A0A140T963 221 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TCRBV3S1A0A5B6 114 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 PRORSD1PA6NEY8 169 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 TCAF2A6NFQ2 919 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 H7C0C1 242 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 M0QZ92 97 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 RFPL2O75678 378 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 MBL2P11226 248 aaPredicted RBP13.31□□□□□ -0.28
CLK3-206ENST00000562078 ENPP1P22413 925 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 ADORA2BP29275 332 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 HLCSP50747 726 aa13.31□□□□□ -0.28
CLK3-206ENST00000562078 PAGE2BQ5JRK9 111 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms