RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 BHLHA9Q7RTU4 235 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 GPRIN1Q7Z2K8 1008 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ZBTB46Q86UZ6 589 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM35AQ86V20 835 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 TDRPQ86YL5 185 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 RFX6Q8HWS3 928 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 TTC13Q8NBP0 860 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 LILRB4Q8NHJ6 448 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC47A1Q96FL8 570 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PCED1BQ96HM7 432 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 RNF157Q96PX1 679 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC2A13Q96QE2 648 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PAFAH2Q99487 392 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ENAMQ9NRM1 1142 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PPP1R14DQ9NXH3 145 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MRPL39Q9NYK5 338 aaKnown RBP8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 FNIP2Q9P278 1114 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 NR2E3Q9Y5X4 410 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 AP4B1Q9Y6B7 739 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MAD1L1Q9Y6D9 718 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 USP3Q9Y6I4 520 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 TM9SF1O15321 606 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 DNAJA2O60884 412 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 CRTAMO95727 393 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ITGB1P05556 798 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MATKP42679 507 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 VEGFBP49765 207 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 NDUFV1P49821 464 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 RABGGTBP53611 331 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC5A3P53794 718 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ATXN3P54252 364 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MYBPC1Q00872 1141 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 TSPY1Q01534 308 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 DPYSL2Q16555 572 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MAJINQ3KP22 176 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM171BQ6P995 826 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 POTEHQ6S545 545 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 DENND5BQ6ZUT9 1274 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 CENPUQ71F23 418 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MAMDC2Q7Z304 686 aaPredicted RBP8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ZER1Q7Z7L7 766 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 HPS6Q86YV9 775 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 CROCCP3Q8IVE0 287 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 UNC45BQ8IWX7 931 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 CCDC185Q8N715 623 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 OR8H1Q8NGG4 311 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PCDH19Q8TAB3 1148 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PYROXD1Q8WU10 500 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 HDAC11Q96DB2 347 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 COX4I2Q96KJ9 171 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ZBED2Q9BTP6 218 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 MAGEB5Q9BZ81 275 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 NGRNQ9NPE2 291 aaKnown RBP8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 ARMC1Q9NVT9 282 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 KLHL3Q9UH77 587 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 CDH9Q9ULB4 789 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PCDHGB7Q9Y5F8 929 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 CEPT1Q9Y6K0 416 aa8.04□□□□□ -1.12
PDLIM5-221ENST00000542407 PTPRDP23468 1912 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 APOL1O14791 398 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 SNRPAP09012 282 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM58BPP0C7Q3 252 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 BRCC3P46736 316 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 LIMK1P53667 647 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 NR1H2P55055 460 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 RAB15P59190 212 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 PITX1P78337 314 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 IRX4P78413 519 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM189BP81408 668 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 TUSC3Q13454 348 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 GPNMBQ14956 572 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 CCDC58Q4VC31 144 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 CLLU1OSQ5K130 101 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 HFE2Q6ZVN8 426 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 STRADAQ7RTN6 431 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 AKAP14Q86UN6 197 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 ELMOD1Q8N336 334 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 BANPQ8N9N5 519 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 ATP6V1E2Q96A05 226 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 FAM149B1Q96BN6 582 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 GLT1D1Q96MS3 346 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 CTRCQ99895 268 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 ZNF670Q9BS34 389 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 WWP1Q9H0M0 922 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 WNT5BQ9H1J7 359 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 RAD21L1Q9H4I0 556 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 CSNK1G1Q9HCP0 422 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 TBC1D23Q9NUY8 699 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC39A1Q9NY26 324 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC24A2Q9UI40 661 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 FUOMA2VDF0 154 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 B8ZZF3 427 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 NRP1O14786 923 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 CNOT3O75175 753 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 ZMPSTE24O75844 475 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 TGDSO95455 350 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 PIM1P11309 404 aaPredicted RBP8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 RPP38P78345 283 aaKnown RBP8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 XIAPP98170 497 aa8.03□□□□□ -1.12
PDLIM5-221ENST00000542407 PFKPQ01813 784 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms