RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 VPS45Q9NRW7 570 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 IMPAD1Q9NX62 359 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 PLK2Q9NYY3 685 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MARCH2Q9P0N8 246 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TPRKBQ9Y3C4 175 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SMIM35A0A1B0GVV1 85 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM20BO75063 409 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CPSF4O95639 269 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MT-ND1P03886 318 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MMP3P08254 477 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MAPK1P28482 360 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CSTF3Q12996 717 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ADHFE1Q8IWW8 467 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CPSF7Q8N684 471 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SETD9Q8NE22 299 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 OR4L1Q8NH43 312 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CENPNQ96H22 339 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 OSBPL6Q9BZF3 934 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ATAD3AQ9NVI7 634 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MYBPHLA2RUH7 354 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 E7ENX8 843 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MATN3O15232 486 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 DNAJA2O60884 412 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 AHSGP02765 367 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 GMPRP36959 345 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 LRRC74AQ0VAA2 488 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 GALNT3Q14435 633 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 DGUOKQ16854 277 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 DUSP28Q4G0W2 176 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CASP10Q92851 521 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 PCED1BQ96HM7 432 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MLPHQ9BV36 600 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ADI1Q9BV57 179 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 HPS4Q9NQG7 708 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 UBA2Q9UBT2 640 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TIMM22Q9Y584 194 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TAF1P21675 1872 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MYH4Q9Y623 1939 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF487B1APH4 448 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 RGS14O43566 566 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 BCAS2O75934 225 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 BRCC3P46736 316 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ATP6V0D1P61421 351 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TRAP1Q12931 704 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CDH18Q13634 790 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 DGCR6Q14129 220 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TRIM60Q495X7 471 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 SYTL3Q4VX76 610 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 HS6ST3Q8IZP7 471 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 NTAN1Q96AB6 310 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ROPN1LQ96C74 230 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 GPR22Q99680 433 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 AGO3Q9H9G7 860 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ZBTB26Q9HCK0 441 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TNPO3Q9Y5L0 923 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 DYTNA2CJ06 578 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ZSCAN9O15535 394 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF7P17097 686 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 WARSP23381 471 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 KPNA1P52294 538 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 LIPEQ05469 1076 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 SDHAF4Q5VUM1 108 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CYS1Q717R9 158 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 OFCC1Q8IZS5 231 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM130Q8N3G9 435 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 GATA6Q92908 595 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TBATAQ96M53 351 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 FCRL3Q96P31 734 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 FTHL17Q9BXU8 183 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 VRTNQ9H8Y1 702 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ZFYVE28Q9HCC9 887 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 SMPD3Q9NY59 655 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 VPS28Q9UK41 221 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 BCORQ6W2J9 1755 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CAPN14A8MX76 684 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PABPC4LP0CB38 370 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CHRNA4P43681 627 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PPP3CCP48454 512 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PAFAH1B3Q15102 231 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 MAPKAPK3Q16644 382 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 FBXO48Q5FWF7 155 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PERM1Q5SV97 790 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TSTD2Q5T7W7 516 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM91A1Q658Y4 838 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF280DQ6N043 979 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 HFE2Q6ZVN8 426 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 PROSER1Q86XN7 944 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CARNMT1Q8N4J0 409 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 SVOPQ8N4V2 548 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 TEPSINQ96N21 525 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 OXCT2Q9BYC2 517 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CNOT6Q9ULM6 557 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 KAT6AQ92794 2004 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CST1P01037 141 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ASLP04424 464 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 ANXA6P08133 673 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 CYP3A5P20815 502 aa8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 RPL9P32969 192 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 RPS9P46781 194 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-216ENST00000512820 RUNX1T1Q06455 604 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms