RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MUSKO15146 869 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 BNIP3LO60238 219 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 VAPBO95292 243 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PSMC3P17980 439 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 UGT1A1P22309 533 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 GRK3P35626 688 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RPS6P62753 249 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ROR1Q01973 937 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 NME3Q13232 169 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SQLEQ14534 574 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PAOXQ6QHF9 649 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 DEFB132Q7Z7B7 95 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 EXOC8Q8IYI6 725 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ATP6V1E2Q96A05 226 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TMEM125Q96AQ2 219 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ALPK1Q96QP1 1244 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 MECRQ9BV79 373 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 UGT2B28Q9BY64 529 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SMARCAD1Q9H4L7 1026 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 LRRC40Q9H9A6 602 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RPF1Q9H9Y2 349 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CMTM6Q9NX76 183 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SMPD3Q9NY59 655 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 FAM170BA6NMN3 283 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ESRRBO95718 433 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RETP07949 1114 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TCN1P20061 433 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 LRPAP1P30533 357 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 VASPP50552 380 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SLC6A3Q01959 620 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RNF219Q5W0B1 726 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 OR6B2Q6IFH4 312 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 DENND1BQ6P3S1 775 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TMEM270Q6UE05 265 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 LRRC56Q8IYG6 542 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RNF168Q8IYW5 571 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CHDHQ8NE62 594 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 FGF11Q92914 225 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PPWD1Q96BP3 646 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CCDC68Q9H2F9 335 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RETREG1Q9H6L5 497 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 C12orf10Q9HB07 376 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 NMRAL1Q9HBL8 299 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TBC1D23Q9NUY8 699 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 USP18Q9UMW8 372 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 TLR6Q9Y2C9 796 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 INO80B-WBP1J3KQ70 363 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 INPPL1O15357 1258 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 SCN2BO60939 215 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ENO1P06733 434 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ASNSP08243 561 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 GABRB1P18505 474 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CYP2C18P33260 490 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 FLOT2Q14254 428 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 EMC2Q15006 297 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 HIST2H2ACQ16777 129 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RFX4Q33E94 735 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 LRIF1Q5T3J3 769 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF697Q5TEC3 545 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 IL31Q6EBC2 164 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ALKAL1Q6UXT8 129 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 HIPK4Q8NE63 616 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 AGBL3Q8NEM8 1001 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 HTR3CQ8WXA8 447 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CDKL2Q92772 493 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 ATOH8Q96SQ7 321 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 RAVER2Q9HCJ3 691 aaKnown RBP5.37□□□□□ -1.55
SYNE1-220ENST00000471834 PXMP2Q9NR77 195 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 NME7Q9Y5B8 376 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 CSNK1G3Q9Y6M4 447 aa5.37□□□□□ -1.55
SYNE1-220ENST00000471834 KRBA1A5PL33 1030 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TRPC5OSA6NMA1 111 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 DCXO43602 365 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PRPSAP2O60256 369 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PRMT3O60678 531 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 FKTNO75072 461 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 HPCAL1P37235 193 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RPL10AP62906 217 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 NDUFAF5Q5TEU4 345 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 IER5Q5VY09 327 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MFSD6LQ8IWD5 586 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SPARTQ8N0X7 666 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PLD6Q8N2A8 252 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 C1orf52Q8N6N3 182 aaKnown RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SETD6Q8TBK2 473 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 RCN3Q96D15 328 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MFSD3Q96ES6 412 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 AURKBQ96GD4 344 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CDRT15Q96T59 188 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 EHD1Q9H4M9 534 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 COQ10BQ9H8M1 238 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 CSNK1G1Q9HCP0 422 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 VTA1Q9NP79 307 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 SMPD4Q9NXE4 827 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 FAF1Q9UNN5 650 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TMEM229AB2RXF0 380 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 NFIBO00712 420 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 TULP3O75386 442 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 PSAPP07602 524 aa5.36□□□□□ -1.55
SYNE1-220ENST00000471834 MYCLP1P12525 358 aaPredicted RBP5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms