RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TEX28O15482 410 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 MTSS1O43312 755 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 TIMM44O43615 452 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ACP5P13686 325 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 EDN3P14138 238 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ZNHIT3Q15649 155 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ZCWPW2Q504Y3 356 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 NPLOC4Q8TAT6 608 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 GTF3C2Q8WUA4 911 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PROX1Q92786 737 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 HMCESQ96FZ2 354 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 RIOX1Q9H6W3 641 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 KIAA1257Q9ULG3 409 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF490Q9ULM2 529 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ARL5AQ9Y689 179 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ABCA5Q8WWZ7 1642 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 DNALI1O14645 258 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 DEAF1O75398 565 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CXorf57Q6NSI4 855 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ALYREFQ86V81 257 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 FBXO22Q8NEZ5 403 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 OR56A4Q8NGH8 313 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 WNT8BQ93098 351 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PPP1R16AQ96I34 528 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PANX3Q96QZ0 392 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 KXD1Q9BQD3 176 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 EIF2B3Q9NR50 452 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CHRAC1Q9NRG0 131 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ADPRHL2Q9NX46 363 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ARL5CA6NH57 179 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CACNB4O00305 520 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 KHDRBS3O75525 346 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 EPN2O95208 641 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CCL5P13501 91 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 GSTM5P46439 218 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 GRIA4P48058 902 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 SCN1BQ07699 218 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 LDLRAP1Q5SW96 308 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 BOLLQ8N9W6 283 aaKnown RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 FAM156AQ8NDB6 213 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 BHLHE22Q8NFJ8 381 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 MYLIPQ8WY64 445 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PSMG2Q969U7 264 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 PRR11Q96HE9 360 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF521Q96K83 1311 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 CNTNAP4Q9C0A0 1308 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 TOR3AQ9H497 397 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 ATP13A3Q9H7F0 1226 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 NEK6Q9HC98 313 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 DMTF1Q9Y222 760 aa7.37□□□□□ -1.23
VPS13A-202ENST00000357409 MEIS2O14770 477 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 EIF3HO15372 352 aaKnown RBP eCLIP7.36□□□□□ -1.231e-6■■■■□ 24.5
VPS13A-202ENST00000357409 ATP8B1O43520 1251 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 PCDHGA12O60330 932 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 KPNB1Q14974 876 aaKnown RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 INAQ16352 499 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 FAM180BQ6P0A1 224 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF248Q8NDW4 579 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 PXYLP1Q8TE99 480 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 METTL21AQ8WXB1 218 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 NXNL1Q96CM4 212 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 UNC93B1Q9H1C4 597 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 PXDNLA1KZ92 1463 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 FAM92AA1XBS5 289 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 BCLAF3A2AJT9 711 aaKnown RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 PLOD3O60568 738 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 OAZ2O95190 189 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 FASP25445 335 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SSR2P43308 183 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 PCED1BQ96HM7 432 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 TTLL2Q9BWV7 592 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 IRF2BPLQ9H1B7 796 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 RBMX2Q9Y388 322 aaKnown RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 NRKQ7Z2Y5 1582 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 NCAM2O15394 837 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 HCN1O60741 890 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SERPINA1P01009 418 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 LINGO3P0C6S8 592 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 TLX1P31314 330 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 GP5P40197 560 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 TAS2R41P59536 307 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SLC26A11Q86WA9 606 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 C1QTNF7Q9BXJ2 289 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 PRKD2Q9BZL6 878 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 FAM192AQ9GZU8 254 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SERHL2Q9H4I8 314 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SERHLQ9NQF3 203 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 COL20A1Q9P218 1284 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 DRG1Q9Y295 367 aaKnown RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 RFXANKO14593 260 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 CES1P23141 567 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 DGKAP23743 735 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 ADRA1DP25100 572 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 NUP62P37198 522 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 CRYBB1P53674 252 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SNU13P55769 128 aaKnown RBP7.36□□□□□ -1.23
VPS13A-202ENST00000357409 KCNC4Q03721 635 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 MGAT5Q09328 741 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 SLC45A4Q5BKX6 768 aa7.36□□□□□ -1.23
VPS13A-202ENST00000357409 DCLRE1AQ6PJP8 1040 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms