RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 KMT5CQ86Y97 462 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 LINS1Q8NG48 757 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 RBM17Q96I25 401 aaKnown RBP2.85□□□□□ -1.95
SCN1A-208ENST00000625916 C8orf48Q96LL4 319 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 C17orf75Q9HAS0 396 aa2.85□□□□□ -1.95
SCN1A-208ENST00000625916 CISD1Q9NZ45 108 aaKnown RBP2.85□□□□□ -1.95
SCN1A-208ENST00000625916 PDS5AQ29RF7 1337 aaKnown RBP2.85□□□□□ -1.95
SCN1A-208ENST00000625916 A0A087WV62 115 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 AKR1B15C9JRZ8 316 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-208ENST00000625916 ACKR2O00590 384 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 CRLF1O75462 422 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 CD58P19256 250 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 PDIA3P30101 505 aaKnown RBP2.84□□□□□ -1.95
SCN1A-208ENST00000625916 HNF1BP35680 557 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 USP8P40818 1118 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 MCM2P49736 904 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 GALNT1Q10472 559 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-208ENST00000625916 ITGADQ13349 1161 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 SLC18A3Q16572 532 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 EDRF1Q3B7T1 1238 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 SLC35E4Q6ICL7 350 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 GFRALQ6UXV0 394 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 PRSS45Q7RTY3 260 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 GTSCR1Q86UQ5 136 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 TMEM219Q86XT9 240 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 SPAG16Q8N0X2 631 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 GJC3Q8NFK1 279 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 OR6Y1Q8NGX8 325 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 CSGALNACT1Q8TDX6 532 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 SLC20A1Q8WUM9 679 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 RND1Q92730 232 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 RNFT2Q96EX2 444 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 MASTLQ96GX5 879 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 ZC3HAV1LQ96H79 300 aaKnown RBP2.84□□□□□ -1.95
SCN1A-208ENST00000625916 LRRC1Q9BTT6 524 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 FSD1Q9BTV5 496 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 G6PC2Q9NQR9 355 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 CNGB3Q9NQW8 809 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 DACT1Q9NYF0 836 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 LRCH1Q9Y2L9 728 aa2.84□□□□□ -1.95
SCN1A-208ENST00000625916 IGKV6D-41A0A0C4DH26 115 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 KLRF2D3W0D1 207 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 PCDH7O60245 1069 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 PCNAP12004 261 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 ITGA2P17301 1181 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 CHATP28329 748 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 RYKP34925 604 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 TERF1P54274 439 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 PUM3Q15397 648 aaKnown RBP2.83□□□□□ -1.96
SCN1A-208ENST00000625916 LPAL2Q16609 132 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 CTF1Q16619 201 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 RGMBQ6NW40 437 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 ZNF852Q6ZMS4 543 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 DSELQ8IZU8 1212 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 MAGEC3Q8TD91 643 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 ZNF524Q96C55 264 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 C17orf77Q96MU5 243 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 KRTAP4-3Q9BYR4 195 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 PCDH9Q9HC56 1237 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 METTL14Q9HCE5 456 aaKnown RBP2.83□□□□□ -1.96
SCN1A-208ENST00000625916 NLRC4Q9NPP4 1024 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 MCM9Q9NXL9 1143 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 OGFRQ9NZT2 677 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 PADI1Q9ULC6 663 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 A3GALT2U3KPV4 340 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 ADGRF5Q8IZF2 1346 aa2.83□□□□□ -1.96
SCN1A-208ENST00000625916 HSPB2A8KAH6 182 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 BLOC1S5-TXNDC5H3BN57 136 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 INHBAP08476 426 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 PATE4P0C8F1 98 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 PAX1P15863 534 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 NR1D1P20393 614 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 HOXA1P49639 335 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-208ENST00000625916 SEC61BP60468 96 aaKnown RBP2.82□□□□□ -1.96
SCN1A-208ENST00000625916 TNFAIP2Q03169 654 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 HSPB2Q16082 182 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 STXBP5Q5T5C0 1151 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 TRNP1Q6NT89 227 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 TBC1D26Q86UD7 250 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 WDR63Q8IWG1 891 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 HCAR2Q8TDS4 363 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 ABTB1Q969K4 478 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-208ENST00000625916 ZNF354BQ96LW1 612 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 RMDN3Q96TC7 470 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 UBXN6Q9BZV1 441 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 CHODLQ9H9P2 273 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 FKRPQ9H9S5 495 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 TMEM160Q9NX00 188 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 CD207Q9UJ71 328 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 AMDHD2Q9Y303 409 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 NFE2L3Q9Y4A8 694 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 PRSS21Q9Y6M0 314 aa2.82□□□□□ -1.96
SCN1A-208ENST00000625916 A0A0U1RQF3 1178 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 ARHGAP10A1A4S6 786 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 CHRM4P08173 479 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 PTPN2P17706 415 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 ITGAXP20702 1163 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 CLCNKAP51800 687 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 PRKAA2P54646 552 aa2.81□□□□□ -1.96
SCN1A-208ENST00000625916 NR1H2P55055 460 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms