RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 C5AR1P21730 350 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PSMD8P48556 350 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 COPAP53621 1224 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SIGLEC14Q08ET2 396 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 FZD5Q13467 585 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 MTM1Q13496 603 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 FASTKD3Q14CZ7 662 aaKnown RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 TAF1AQ15573 450 aaPredicted RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 CST6Q15828 149 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 UGP2Q16851 508 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PKN3Q6P5Z2 889 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 FBXO38Q6PIJ6 1188 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SYT13Q7L8C5 426 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 ZSWIM9Q86XI8 627 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 ANKMY2Q8IV38 441 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PALM2Q8IXS6 379 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 AGGF1Q8N302 714 aaeCLIP10.79□□□□□ -0.68
SS18-213ENST00000579640 MPP5Q8N3R9 675 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 BLOC1S5Q8TDH9 187 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 RAB7BQ96AH8 199 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 CLDN23Q96B33 292 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 C19orf43Q9BQ61 176 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 IER2Q9BTL4 223 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 HDAC8Q9BY41 377 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 CD248Q9HCU0 757 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.79□□□□□ -0.683e-6■■□□□ 11.9
SS18-213ENST00000579640 SARDHQ9UL12 918 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 C2orf81A6NN90 581 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 BANF1O75531 89 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 USP1O94782 785 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 POLBP06746 335 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 TIMP2P16035 220 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 COL9A1P20849 921 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 SLC8A1P32418 973 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 PHBP35232 272 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 MAGEA9P43362 315 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 RPS9P46781 194 aaKnown RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 NEK3P51956 506 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 DGKEP52429 567 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 RPS14P62263 151 aaKnown RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 ELP6Q0PNE2 266 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 CRY1Q16526 586 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 SPANXN3Q5MJ09 141 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 KIAA1211LQ6NV74 962 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 ERAP2Q6P179 960 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 ERN2Q76MJ5 926 aaKnown RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 PARS2Q7L3T8 475 aaKnown RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 GLT6D1Q7Z4J2 308 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 TTC7BQ86TV6 843 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 TMEM135Q86UB9 458 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 TMPRSS6Q8IU80 811 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 PJA1Q8NG27 643 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 ANKRD7Q92527 254 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 EDAQ92838 391 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 ARRDC3Q96B67 414 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 C9orf72Q96LT7 481 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 WDR83Q9BRX9 315 aaKnown RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 FOXQ1Q9C009 403 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 PABPC3Q9H361 631 aaKnown RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 POLMQ9NP87 494 aaPredicted RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 NINJ2Q9NZG7 142 aa10.78□□□□□ -0.68
SS18-213ENST00000579640 MTF2Q9Y483 593 aaPredicted RBP10.78□□□□□ -0.68
SS18-213ENST00000579640 ATG2BQ96BY7 2078 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 MROH6A6NGR9 719 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 STK25O00506 426 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 DCXO43602 365 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 DNTTP04053 509 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 ABHD2P08910 425 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 ZNF30P17039 623 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 CTPS1P17812 591 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 PAMP19021 973 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 HNF1BP35680 557 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 CRADDP78560 199 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 SEPT6Q14141 434 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 FRG1Q14331 258 aaKnown RBP10.77□□□□□ -0.68
SS18-213ENST00000579640 KYNUQ16719 465 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 TTC31Q49AM3 519 aaPredicted RBP10.77□□□□□ -0.68
SS18-213ENST00000579640 HP1BP3Q5SSJ5 553 aaPredicted RBP10.77□□□□□ -0.68
SS18-213ENST00000579640 STEAP4Q687X5 459 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 DENND2CQ68D51 928 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 FBXL19Q6PCT2 694 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 Q6ZS52 159 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 IGDCC3Q8IVU1 814 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 GSDMBQ8TAX9 411 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 STYXQ8WUJ0 223 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 NECAB3Q96P71 396 aaPredicted RBP10.77□□□□□ -0.68
SS18-213ENST00000579640 UHRF1Q96T88 793 aaPredicted RBP10.77□□□□□ -0.68
SS18-213ENST00000579640 CHRDQ9H2X0 955 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 SEMA4AQ9H3S1 761 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 LRRC4CQ9HCJ2 640 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 ZNF711Q9Y462 761 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 SPO11Q9Y5K1 396 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 RPS6KL1Q9Y6S9 549 aa10.77□□□□□ -0.68
SS18-213ENST00000579640 MID1O15344 667 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 SLC7A4O43246 635 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 RIPK2O43353 540 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 LDB2O43679 373 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 ALPIP09923 528 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 PIRTP0C851 137 aa10.77□□□□□ -0.69
SS18-213ENST00000579640 ADRB3P13945 408 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms