RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 HS1BP3Q53T59 392 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TAF1BQ53T94 588 aaPredicted RBP8.88□□□□□ -0.99
USP4-213ENST00000488520 PPP6R3Q5H9R7 873 aaPredicted RBP8.88□□□□□ -0.99
USP4-213ENST00000488520 COX20Q5RI15 118 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 MPP7Q5T2T1 576 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 C9orf64Q5T6V5 341 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 LRRC38Q5VT99 294 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TBC1D3GQ6DHY5 549 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TBC1D3CQ6IPX1 549 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TRNP1Q6NT89 227 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 PCSK4Q6UW60 755 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 ZNF662Q6ZS27 426 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 ZNF354CQ86Y25 554 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 SPACA3Q8IXA5 215 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 RCOR2Q8IZ40 523 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TBC1D3Q8IZP1 549 aaPredicted RBP8.88□□□□□ -0.99
USP4-213ENST00000488520 CFAP52Q8N1V2 620 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 STK40Q8N2I9 435 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 AADATQ8N5Z0 425 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 CCDC185Q8N715 623 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 OR2T34Q8NGX1 318 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.88□□□□□ -0.99
USP4-213ENST00000488520 TEKT4Q8WW24 435 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 TBC1D31Q96DN5 1066 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 MYEOVQ96EZ4 313 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 RPL10LQ96L21 214 aaKnown RBP8.88□□□□□ -0.99
USP4-213ENST00000488520 MRGPRX3Q96LB0 322 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 LGMNQ99538 433 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 ZYG11BQ9C0D3 744 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 STOML2Q9UJZ1 356 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 INTS6Q9UL03 887 aaKnown RBP8.88□□□□□ -0.99
USP4-213ENST00000488520 SCML1Q9UN30 329 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 CLCA2Q9UQC9 943 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 ERVW-1Q9UQF0 538 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 ANKRD36A6QL64 1941 aa8.88□□□□□ -0.99
USP4-213ENST00000488520 CCDC66A2RUB6 948 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 MIF4GDA9UHW6 222 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 J3QKU1 62 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 IL1BP01584 269 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 RARAP10276 462 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CDK4P11802 303 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CKMT2P17540 419 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 EPHB2P29323 1055 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 OR1E1P30953 314 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 ACTN2P35609 894 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CDH4P55283 916 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CDH6P55285 790 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 NXPH1P58417 271 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 PPP2CBP62714 309 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 RPS24P62847 133 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 PPP2CAP67775 309 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 TLE3Q04726 772 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CDH18Q13634 790 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 HNRNPA1L2Q32P51 320 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 PLA2G4EQ3MJ16 856 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 SLC45A4Q5BKX6 768 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 FAM133BQ5BKY9 247 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 FSCBQ5H9T9 825 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 ARHGAP40Q5TG30 622 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 NADSYN1Q6IA69 706 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 C11orf63Q6NUN7 778 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 FBXL22Q6P050 247 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 C16orf46Q6P387 395 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 BNIPLQ7Z465 357 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 POLNQ7Z5Q5 900 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 SPATS2Q86XZ4 545 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 CCDC50Q8IVM0 306 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 FIBINQ8TAL6 211 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 TTC17Q96AE7 1141 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 PRICKLE1Q96MT3 831 aaPredicted RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 FAM129BQ96TA1 746 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CALN1Q9BXU9 219 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 KCNF1Q9H3M0 494 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CAAP1Q9H8G2 361 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 CPNE5Q9HCH3 593 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP4-213ENST00000488520 GPATCH2LQ9NWQ4 482 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 PPARGC1AQ9UBK2 798 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 XPO7Q9UIA9 1087 aaKnown RBP8.87□□□□□ -0.99
USP4-213ENST00000488520 SLCO3A1Q9UIG8 710 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 HPCAL4Q9UM19 191 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 PCDHB1Q9Y5F3 818 aa8.87□□□□□ -0.99
USP4-213ENST00000488520 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP4-213ENST00000488520 A0A1B0GVM2 712 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 TCAF2A6NFQ2 919 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 DRGXA6NNA5 263 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 YKT6O15498 198 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 FGF10O15520 208 aaPredicted RBP8.86□□□□□ -0.99
USP4-213ENST00000488520 PSTPIP1O43586 416 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 SIGLEC6O43699 453 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 MT-CO3P00414 261 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 MYF5P13349 255 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 KRT10P13645 584 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 VAV1P15498 845 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 ZFXP17010 805 aaPredicted RBP8.86□□□□□ -0.99
USP4-213ENST00000488520 GOT1P17174 413 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 NFKB1P19838 968 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 KDELR1P24390 212 aa8.86□□□□□ -0.99
USP4-213ENST00000488520 NNMTP40261 264 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms