RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 GRTP1Q5TC63 336 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 MROH9Q5TGP6 573 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 PDPK2PQ6A1A2 396 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 ALG1LQ6GMV1 187 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 PDE12Q6L8Q7 609 aaKnown RBP12.91□□□□□ -0.34
CLK3-201ENST00000345005 CXorf57Q6NSI4 855 aaKnown RBP12.91□□□□□ -0.34
CLK3-201ENST00000345005 CPXM2Q8N436 756 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 E2F7Q96AV8 911 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 MFSD3Q96ES6 412 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 SAMD11Q96NU1 681 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 FAM111AQ96PZ2 611 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 KLF6Q99612 283 aaPredicted RBP12.91□□□□□ -0.34
CLK3-201ENST00000345005 SEMA3CQ99985 751 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 CINPQ9BW66 212 aaPredicted RBP12.91□□□□□ -0.34
CLK3-201ENST00000345005 PRKD2Q9BZL6 878 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 NSMCE4AQ9NXX6 385 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 CFAP97Q9P2B7 532 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 NOTCH4Q99466 2003 aa12.91□□□□□ -0.34
CLK3-201ENST00000345005 RANBP2P49792 3224 aaKnown RBP12.91□□□□□ -0.34
CLK3-201ENST00000345005 SOBPA7XYQ1 873 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 CSPG5O95196 566 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 HNRNPA1P09651 372 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLK3-201ENST00000345005 ANPEPP15144 967 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 NMBRP28336 390 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 HOXA9P31269 272 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 CCNFP41002 786 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 SERPINH1P50454 418 aaKnown RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 POU6F1Q14863 301 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 TBC1D25Q3MII6 688 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 TEDDM1Q5T9Z0 273 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 KDELC2Q7Z4H8 507 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 KCNMB4Q86W47 210 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 CARNMT1Q8N4J0 409 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 SLC25A41Q8N5S1 370 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 LEMD2Q8NC56 503 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 NRG4Q8WWG1 115 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 LZICQ8WZA0 190 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 JADE3Q92613 823 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 FAM161BQ96MY7 647 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 PSKH2Q96QS6 385 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 RANBP9Q96S59 729 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 SRPK1Q96SB4 655 aaKnown RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 SLC46A2Q9BY10 475 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 MAN1C1Q9NR34 630 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 C20orf96Q9NUD7 363 aaPredicted RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 SIRPGQ9P1W8 387 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 TCAF1Q9Y4C2 921 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 LOC285095A0A1B0GVY8 99 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 HEATR9A2RTY3 570 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 CBX4O00257 560 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 GRM6O15303 877 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 CLASP2O75122 1294 aaKnown RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 RFPL1O75677 317 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 EPOP01588 193 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 SERPINF2P08697 491 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 BGNP21810 368 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 SPRP35270 261 aaPredicted RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 CUL3Q13618 768 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 ARHGAP15Q53QZ3 475 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 HSP90AA5PQ58FG0 334 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 MPP7Q5T2T1 576 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 WDR75Q8IWA0 830 aaKnown RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 ST13P4Q8IZP2 240 aaPredicted RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 TDRD5Q8NAT2 981 aaKnown RBP12.9□□□□□ -0.34
CLK3-201ENST00000345005 MIPOL1Q8TD10 442 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 ACMSDQ8TDX5 336 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 FEM1CQ96JP0 617 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 MGME1Q9BQP7 344 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 THAP1Q9NVV9 213 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 IRAK4Q9NWZ3 460 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 ZDHHC7Q9NXF8 308 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 DPP7Q9UHL4 492 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 ARHGAP26Q9UNA1 814 aa12.9□□□□□ -0.34
CLK3-201ENST00000345005 MYOFQ9NZM1 2061 aa12.9□□□□□ -0.35
CLK3-201ENST00000345005 HMX2A2RU54 273 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 LEFTY2O00292 366 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 XYLBO75191 536 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 ITGA2BP08514 1039 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 GJA1P17302 382 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 PAMP19021 973 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 CHRNA4P43681 627 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 CSE1LP55060 971 aaKnown RBP12.89□□□□□ -0.35
CLK3-201ENST00000345005 TMPRSS15P98073 1019 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 PDE1BQ01064 536 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 CDH18Q13634 790 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 LAMB3Q13751 1172 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 BMPR2Q13873 1038 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 MPPE1Q53F39 396 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 GPR158Q5T848 1215 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 PRPF38BQ5VTL8 546 aaKnown RBP12.89□□□□□ -0.35
CLK3-201ENST00000345005 ARHGAP22Q7Z5H3 698 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 NUDCD3Q8IVD9 361 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 SHKBP1Q8TBC3 707 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 FAM81AQ8TBF8 368 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 EZH1Q92800 747 aaPredicted RBP12.89□□□□□ -0.35
CLK3-201ENST00000345005 ECSITQ9BQ95 431 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 FEM1AQ9BSK4 669 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 FBXO6Q9NRD1 293 aaPredicted RBP12.89□□□□□ -0.35
CLK3-201ENST00000345005 HCFC1R1Q9NWW0 138 aa12.89□□□□□ -0.35
CLK3-201ENST00000345005 PSAT1Q9Y617 370 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms