RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PARP6Q2NL67 630 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 FASTKD1Q53R41 847 aaKnown RBP8.73□□□□□ -1.01
VPS4B-201ENST00000238497 NUDT18Q6ZVK8 323 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 LONP2Q86WA8 852 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 CRLF3Q8IUI8 442 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 SFTPA1Q8IWL2 248 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 POU5F2Q8N7G0 328 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 DTX3LQ8TDB6 740 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 DENND1AQ8TEH3 1009 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 CENPIQ92674 756 aaPredicted RBP8.73□□□□□ -1.01
VPS4B-201ENST00000238497 TSNARE1Q96NA8 513 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 FCRL3Q96P31 734 aaPredicted RBP8.73□□□□□ -1.01
VPS4B-201ENST00000238497 ABCA7Q8IZY2 2146 aa8.73□□□□□ -1.01
VPS4B-201ENST00000238497 HAUS5O94927 633 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 MT-CO1P00395 513 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 F9P00740 461 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 NQO1P15559 274 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PFKLP17858 780 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 MX2P20592 715 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CORO1AP31146 461 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PSEN1P49768 467 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 SLC12A2P55011 1212 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ELF3P78545 371 aaPredicted RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 DMC1Q14565 340 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CNGA3Q16281 694 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 FBXO43Q4G163 708 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 VWA5B1Q5TIE3 1220 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 SCD5Q86SK9 330 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CHSY1Q86X52 802 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PSTKQ8IV42 348 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 EFCAB3Q8N7B9 438 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TXNDC5Q8NBS9 432 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 MCUQ8NE86 351 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 DDI1Q8WTU0 396 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 SLC39A8Q9C0K1 460 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 SP110Q9HB58 689 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 SPHK2Q9NRA0 654 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TLK1Q9UKI8 766 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PACSIN3Q9UKS6 424 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PCDHGA2Q9Y5H1 932 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 HHLA1C9JL84 531 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 E7ESA3 106 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 GYG2O15488 501 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PRPF4O43172 522 aaKnown RBP eCLIP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TULP3O75386 442 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PRKCGP05129 697 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ARL1P40616 181 aaPredicted RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PLK1P53350 603 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ATXN3P54252 364 aaPredicted RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 MESP2Q0VG99 397 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 THOC5Q13769 683 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PACS1Q6VY07 963 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ZNF534Q76KX8 674 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PTAR1Q7Z6K3 402 aaPredicted RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 C12orf40Q86WS4 652 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CACUL1Q86Y37 369 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 RELL1Q8IUW5 271 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 DENND6AQ8IWF6 608 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CHPFQ8IZ52 775 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ARHGAP18Q8N392 663 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ACDQ96AP0 544 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CERS2Q96G23 380 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 NOD2Q9HC29 1040 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 COMMD8Q9NX08 183 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 DNAJC16Q9Y2G8 782 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ACTL7BQ9Y614 415 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ACTL7AQ9Y615 435 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ZMPSTE24O75844 475 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 DCTN3O75935 186 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CNTN5O94779 1100 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 KLF8O95600 359 aaPredicted RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 OLFM2O95897 454 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CYBBP04839 570 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ITGA2BP08514 1039 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TYRP14679 529 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 OPRD1P41143 372 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 GARSP41250 739 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 HARS2P49590 506 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 GSCP56915 257 aaPredicted RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 IRF9Q00978 393 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TEX44Q53QW1 395 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 YTHDF3Q7Z739 585 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TDRPQ86YL5 185 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 HMGB4Q8WW32 186 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 ALKBH8Q96BT7 664 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 NDNQ99608 321 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CYP4F12Q9HCS2 524 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 PNPLA8Q9NP80 782 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 CYLDQ9NQC7 956 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 TMEM216Q9P0N5 145 aa8.72□□□□□ -1.01
VPS4B-201ENST00000238497 MTO1Q9Y2Z2 717 aaKnown RBP8.72□□□□□ -1.01
VPS4B-201ENST00000238497 AXIN1O15169 862 aa8.71□□□□□ -1.01
VPS4B-201ENST00000238497 MAP3K13O43283 966 aa8.71□□□□□ -1.01
VPS4B-201ENST00000238497 SPAG6O75602 509 aa8.71□□□□□ -1.01
VPS4B-201ENST00000238497 MLLT6P55198 1093 aaPredicted RBP8.71□□□□□ -1.01
VPS4B-201ENST00000238497 TBX4P57082 545 aa8.71□□□□□ -1.01
VPS4B-201ENST00000238497 MPP3Q13368 585 aa8.71□□□□□ -1.01
VPS4B-201ENST00000238497 XRCC4Q13426 336 aa8.71□□□□□ -1.01
VPS4B-201ENST00000238497 GRAMD4Q6IC98 578 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 6 ms