RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 BICD1Q96G01 975 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 SCMH1Q96GD3 660 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 ZSCAN31Q96LW9 406 aaPredicted RBP3.89□□□□□ -1.79
SCFD1-216ENST00000555550 IL17FQ96PD4 163 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 TWNKQ96RR1 684 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 EYA3Q99504 573 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 CLSTN3Q9BQT9 956 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 REEP2Q9BRK0 252 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 PCDHAC2Q9Y5I4 1007 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 MMP24Q9Y5R2 645 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 ADGRF5Q8IZF2 1346 aa3.89□□□□□ -1.79
SCFD1-216ENST00000555550 MAGEA13PA6NCF6 341 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 HSPB2A8KAH6 182 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 KLRF2D3W0D1 207 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 IGHV4-30-4P0DP06 118 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 PTPN2P17706 415 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 HALP42357 657 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 ACSM2AQ08AH3 577 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 DLG1Q12959 904 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 VEPH1Q14D04 833 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 HSPB2Q16082 182 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 SOWAHAQ2M3V2 549 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 LCE3CQ5T5A8 94 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 ZNF771Q7L3S4 317 aaPredicted RBP3.88□□□□□ -1.79
SCFD1-216ENST00000555550 EXOC3L1Q86VI1 746 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 ZC3HC1Q86WB0 502 aaKnown RBP3.88□□□□□ -1.79
SCFD1-216ENST00000555550 POC1AQ8NBT0 407 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 ZNF114Q8NC26 417 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 SPATA20Q8TB22 786 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 SECTM1Q8WVN6 248 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 RUFY2Q8WXA3 655 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 ERGIC1Q969X5 290 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 SIN3AQ96ST3 1273 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 GAREM1Q9H706 876 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 CISD1Q9NZ45 108 aaKnown RBP3.88□□□□□ -1.79
SCFD1-216ENST00000555550 PEMTQ9UBM1 199 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 CTNNAL1Q9UBT7 734 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCFD1-216ENST00000555550 PCDHGB3Q9Y5G1 929 aa3.88□□□□□ -1.79
SCFD1-216ENST00000555550 ANTXRLA6NF34 631 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 CBY3A6NI87 242 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 HSPA12AO43301 675 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 ZIC3O60481 467 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 LMX1BO60663 402 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 NDUFB4O95168 129 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 PAK4O96013 591 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-216ENST00000555550 POU1F1P28069 291 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 RYKP34925 604 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 PGM1P36871 562 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 NR1H2P55055 460 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 KRTAP10-3P60369 221 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 TDGQ13569 410 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 EFR3AQ14156 821 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 NEDD9Q14511 834 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 ATG16L1Q676U5 607 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 ADAM5Q6NVV9 412 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 SLC22A25Q6T423 547 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 C17orf99Q6UX52 265 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 LDHAL6AQ6ZMR3 332 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 GPAT4Q86UL3 456 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 TNIP2Q8NFZ5 429 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 ZNF385AQ96PM9 386 aaKnown RBP3.87□□□□□ -1.79
SCFD1-216ENST00000555550 CSF3RQ99062 836 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 HERPUD2Q9BSE4 406 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 ISCA1Q9BUE6 129 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 PPCSQ9HAB8 311 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 SNTG1Q9NSN8 517 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 SLC9A2Q9UBY0 812 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 CDC14AQ9UNH5 594 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 A3GALT2U3KPV4 340 aa3.87□□□□□ -1.79
SCFD1-216ENST00000555550 TP53BP1Q12888 1972 aaPredicted RBP3.87□□□□□ -1.79
SCFD1-216ENST00000555550 A0A1B0GVY2 172 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 HNRNPCL2B2RXH8 293 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GAGE7O76087 117 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 KDM4BO94953 1096 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 PMS2P2O95744 297 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 LDLRP01130 860 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GAGE12FP0CL80 117 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GAGE12GP0CL81 117 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GAGE12IP0CL82 117 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 AMD1P17707 334 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GPD2P43304 727 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 CRIP2P52943 208 aaPredicted RBP3.86□□□□□ -1.79
SCFD1-216ENST00000555550 NLRP5P59047 1200 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 UBE3AQ05086 875 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 CHRNDQ07001 517 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GAGE1Q13065 139 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 GAGE4Q13068 117 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 PPFIA1Q13136 1202 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 TAF11Q15544 211 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 NFIL3Q16649 462 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 WDR45BQ5MNZ6 344 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 MAP3K21Q5TCX8 1036 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 SERTAD4-AS1Q5TG53 156 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 FAM69BQ5VUD6 431 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 UNQ6126/PRO20091Q6UXV3 157 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 TADA2BQ86TJ2 420 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 ANKRD42Q8N9B4 389 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 LSM14AQ8ND56 463 aaKnown RBP3.86□□□□□ -1.79
SCFD1-216ENST00000555550 CREB3L4Q8TEY5 395 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms