RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SLC46A1Q96NT5 459 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ARHGAP9Q9BRR9 750 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ZNF670Q9BS34 389 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 CALN1Q9BXU9 219 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 KDM4CQ9H3R0 1056 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 NOL6Q9H6R4 1146 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 ATP13A1Q9HD20 1204 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 KLHL11Q9NVR0 708 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 DDX56Q9NY93 547 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 SERGEFQ9UGK8 458 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 VPS51Q9UID3 782 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 HS3ST2Q9Y278 367 aa12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 COL27A1Q8IZC6 1860 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-206ENST00000466342 RELNP78509 3460 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 CREBBPQ92793 2442 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 CXorf51AA0A1B0GTR3 108 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 C10orf142B7Z368 130 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 TRIM38O00635 465 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 MCF2LO15068 1137 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 EFSO43281 561 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 SNAP91O60641 907 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 KRT1P04264 644 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 TNNT1P13805 278 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 AMPD1P23109 780 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 IL4RP24394 825 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 ACVRL1P37023 503 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 PSMD8P48556 350 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 CCR5P51681 352 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 TLE1Q04724 770 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 MMRN1Q13201 1228 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 PARP15Q460N3 678 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 ZNF662Q6ZS27 426 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 VSIG1Q86XK7 387 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 SPATS2Q86XZ4 545 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 RNF10Q8N5U6 811 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 AADATQ8N5Z0 425 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 LZTR1Q8N653 840 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 NPWQ8N729 165 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 LRRC57Q8N9N7 239 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 KIAA1524Q8TCG1 905 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 RAPGEF5Q92565 580 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 FAM131CQ96AQ9 280 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 SERAC1Q96JX3 654 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 CCNL2Q96S94 520 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 SPON2Q9BUD6 331 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 KLC2Q9H0B6 622 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 KCNF1Q9H3M0 494 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 LRRC19Q9H756 370 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 KCNK4Q9NYG8 393 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 HPCAL4Q9UM19 191 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 SATB2Q9UPW6 733 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 FARP1Q9Y4F1 1045 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 LRRK2Q5S007 2527 aa12.07□□□□□ -0.48
SQSTM1-206ENST00000466342 USP9YO00507 2555 aaPredicted RBP12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ANKRD36A6QL64 1941 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 LRRD1A4D1F6 860 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CLEC18AA5D8T8 446 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ZNF487B1APH4 448 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 RASA4BC9J798 803 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 SLC7A4O43246 635 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 RASA4O43374 803 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 KDELR3O43731 214 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 PALMO75781 387 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ZMPSTE24O75844 475 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ITGB2P05107 769 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 SRCP12931 536 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 VAV1P15498 845 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 KDELR1P24390 212 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 DRD3P35462 400 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CLCN6P51797 869 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ARF5P84085 180 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 SLC20A2Q08357 652 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 HS1BP3Q53T59 392 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ANKRD20A8PQ5CZ79 823 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 C3orf38Q5JPI3 329 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 AFMIDQ63HM1 303 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 RETSATQ6NUM9 610 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 TMCO3Q6UWJ1 677 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CLEC18BQ6UXF7 455 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ARHGAP12Q8IWW6 846 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 SYCE1Q8N0S2 351 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 SLC25A45Q8N413 288 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 MFSD2AQ8NA29 543 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CLEC18CQ8NCF0 446 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 OR14C36Q8NHC7 312 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 FAF2Q96CS3 445 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 HMCESQ96FZ2 354 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CELF6Q96J87 481 aaKnown RBP12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CCDC114Q96M63 670 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 ZNF830Q96NB3 372 aaPredicted RBP12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 PSMG3-AS1Q96PY0 264 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 PPM1HQ9ULR3 514 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 GUCA1BQ9UMX6 200 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 MAN2B2Q9Y2E5 1009 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 PPP2R2CQ9Y2T4 447 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CAPN6Q9Y6Q1 641 aa12.06□□□□□ -0.48
SQSTM1-206ENST00000466342 CACNA1DQ01668 2161 aa12.05□□□□□ -0.48
SQSTM1-206ENST00000466342 TBC1D3DA0A087WVF3 549 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms