RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTF4	YPR135W	SLP1	Q12232	587 aa		2.75	□□□□□ -1.97
CTF4	YPR135W	TY4B-P	A0A0B7P3V8	1104 aa		2.74	□□□□□ -1.97
CTF4	YPR135W	CHS2	P14180	963 aa		2.74	□□□□□ -1.97
CTF4	YPR135W	GIP2	P40036	548 aa		2.74	□□□□□ -1.97
CTF4	YPR135W	TY4A-H	Q6Q5P6	413 aa		2.74	□□□□□ -1.97
CTF4	YPR135W	GCN2	P15442	1659 aa		2.74	□□□□□ -1.97
CTF4	YPR135W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	2.74	□□□□□ -1.97	not detected
CTF4	YPR135W	CAT8	P39113	1433 aa		2.74	□□□□□ -1.97
CTF4	YPR135W	HAP4	P14064	554 aa		2.73	□□□□□ -1.97
CTF4	YPR135W	YJL181W	P46987	611 aa		2.73	□□□□□ -1.97
CTF4	YPR135W	CYC7	P00045	113 aa		2.73	□□□□□ -1.97
CTF4	YPR135W	ELM1	P32801	640 aa		2.73	□□□□□ -1.97
CTF4	YPR135W	BSD2	P38356	321 aa		2.73	□□□□□ -1.97
CTF4	YPR135W	YER156C	P40093	338 aa	Known RBP	2.73	□□□□□ -1.97
CTF4	YPR135W	ROM1	P53046	1155 aa		2.73	□□□□□ -1.97
CTF4	YPR135W	MAG2	Q06436	670 aa	Known RBP	2.72	□□□□□ -1.97
CTF4	YPR135W	REC8	Q12188	680 aa		2.72	□□□□□ -1.97
CTF4	YPR135W	FOX2	Q02207	900 aa	Known RBP	2.72	□□□□□ -1.97
CTF4	YPR135W	YOR296W	Q08748	1289 aa		2.72	□□□□□ -1.97
CTF4	YPR135W	SPO74	P45819	413 aa		2.71	□□□□□ -1.98
CTF4	YPR135W	CAB1	Q04430	367 aa		2.71	□□□□□ -1.98
CTF4	YPR135W	PDR5	P33302	1511 aa	Known RBP	2.71	□□□□□ -1.98
CTF4	YPR135W	VAN1	P23642	535 aa		2.71	□□□□□ -1.98
CTF4	YPR135W	RNQ1	P25367	405 aa		2.71	□□□□□ -1.98
CTF4	YPR135W	VMA3	P25515	160 aa		2.71	□□□□□ -1.98
CTF4	YPR135W	PPT1	P53043	513 aa		2.71	□□□□□ -1.98
CTF4	YPR135W	IMH1	Q06704	911 aa	Known RBP	2.7	□□□□□ -1.98
CTF4	YPR135W	RRP5	Q05022	1729 aa	Known RBP	2.7	□□□□□ -1.98
CTF4	YPR135W	GAL2	P13181	574 aa		2.7	□□□□□ -1.98
CTF4	YPR135W	SEA4	P38164	1038 aa		2.7	□□□□□ -1.98
CTF4	YPR135W	DSE4	P53753	1117 aa		2.7	□□□□□ -1.98
CTF4	YPR135W	SDH1	Q00711	640 aa		2.7	□□□□□ -1.98
CTF4	YPR135W	ENT1	Q12518	454 aa		2.7	□□□□□ -1.98
CTF4	YPR135W	MRPL33	P20084	86 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	SUV3	P32580	737 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	GIP1	P38229	639 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	PAN5	P38787	379 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	IPL1	P38991	367 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	CWH41	P53008	833 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	DYS1	P38791	387 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	UBP5	P39944	805 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	RSC2	Q06488	889 aa		2.69	□□□□□ -1.98
CTF4	YPR135W	EDE1	P34216	1381 aa		2.68	□□□□□ -1.98
CTF4	YPR135W	SEG2	P34250	1132 aa		2.68	□□□□□ -1.98
CTF4	YPR135W	TRS33	Q99394	268 aa		2.68	□□□□□ -1.98
CTF4	YPR135W	UGA2	P38067	497 aa		2.67	□□□□□ -1.98
CTF4	YPR135W	LDH1	P38139	375 aa		2.67	□□□□□ -1.98
CTF4	YPR135W	GEA1	P47102	1408 aa	Predicted RBP	2.67	□□□□□ -1.98
CTF4	YPR135W	MSB1	P21339	1137 aa	Known RBP	2.67	□□□□□ -1.98
CTF4	YPR135W	LRG1	P35688	1017 aa		2.67	□□□□□ -1.98
CTF4	YPR135W	ISW1	P38144	1129 aa		2.66	□□□□□ -1.98
CTF4	YPR135W	YIL165C	P40446	119 aa		2.66	□□□□□ -1.98
CTF4	YPR135W	TFA2	P36145	328 aa		2.66	□□□□□ -1.98
CTF4	YPR135W	POL12	P38121	705 aa	Predicted RBP	2.66	□□□□□ -1.98
CTF4	YPR135W	YBR197C	P38306	217 aa		2.66	□□□□□ -1.98
CTF4	YPR135W	INP51	P40559	946 aa	Known RBP	2.66	□□□□□ -1.98
CTF4	YPR135W	ECM23	Q02710	187 aa		2.66	□□□□□ -1.98
CTF4	YPR135W	URB1	P34241	1764 aa	Known RBP	2.66	□□□□□ -1.98
CTF4	YPR135W	MSN1	P22148	382 aa		2.66	□□□□□ -1.98
CTF4	YPR135W	CFT1	Q06632	1357 aa	Known RBP	2.65	□□□□□ -1.98
CTF4	YPR135W	GCD1	P09032	578 aa	Predicted RBP	2.65	□□□□□ -1.99
CTF4	YPR135W	ISC10	P32645	267 aa		2.65	□□□□□ -1.99
CTF4	YPR135W	YKL222C	P35995	705 aa		2.65	□□□□□ -1.99
CTF4	YPR135W	MAE1	P36013	669 aa	Known RBP	2.65	□□□□□ -1.99
CTF4	YPR135W	SIS2	P36024	562 aa		2.65	□□□□□ -1.99
CTF4	YPR135W	TYS1	P36421	394 aa	Known RBP	2.65	□□□□□ -1.99
CTF4	YPR135W	NCE103	P53615	221 aa		2.65	□□□□□ -1.99
CTF4	YPR135W	TGL4	P36165	910 aa		2.65	□□□□□ -1.99
CTF4	YPR135W	SNF2	P22082	1703 aa		2.64	□□□□□ -1.99
CTF4	YPR135W	UBX7	P38349	436 aa		2.64	□□□□□ -1.99
CTF4	YPR135W	POL5	P39985	1022 aa	Known RBP	2.64	□□□□□ -1.99
CTF4	YPR135W	ALD3	P54114	506 aa		2.64	□□□□□ -1.99
CTF4	YPR135W	ELG1	Q12050	791 aa		2.64	□□□□□ -1.99
CTF4	YPR135W	GUP1	P53154	560 aa		2.64	□□□□□ -1.99
CTF4	YPR135W	BIO5	P53744	561 aa	Known RBP	2.64	□□□□□ -1.99
CTF4	YPR135W	EMG1	Q06287	252 aa	Known RBP	2.64	□□□□□ -1.99
CTF4	YPR135W	SOG2	Q08817	791 aa		2.64	□□□□□ -1.99
CTF4	YPR135W	FKS3	Q04952	1785 aa		2.63	□□□□□ -1.99
CTF4	YPR135W	ERS1	P17261	260 aa		2.63	□□□□□ -1.99
CTF4	YPR135W	SSA4	P22202	642 aa	Known RBP	2.63	□□□□□ -1.99
CTF4	YPR135W	HGH1	P48362	394 aa	Known RBP	2.63	□□□□□ -1.99
CTF4	YPR135W	KIP3	P53086	805 aa	Known RBP	2.63	□□□□□ -1.99
CTF4	YPR135W	GIC2	Q06648	383 aa		2.63	□□□□□ -1.99
CTF4	YPR135W	ALD4	P46367	519 aa	Known RBP	2.63	□□□□□ -1.99
CTF4	YPR135W	DFG16	Q99234	619 aa		2.63	□□□□□ -1.99
CTF4	YPR135W	NIT1	P40447	199 aa		2.62	□□□□□ -1.99
CTF4	YPR135W	NEO1	P40527	1151 aa		2.62	□□□□□ -1.99
CTF4	YPR135W	FUS1	P11710	512 aa		2.62	□□□□□ -1.99
CTF4	YPR135W	GAS1	P22146	559 aa	Known RBP	2.62	□□□□□ -1.99
CTF4	YPR135W	YCR015C	P25616	317 aa		2.62	□□□□□ -1.99
CTF4	YPR135W	LEM3	P42838	414 aa		2.62	□□□□□ -1.99
CTF4	YPR135W	RPN11	P43588	306 aa	Known RBP	2.62	□□□□□ -1.99
CTF4	YPR135W	SPO71	Q03868	1245 aa		2.62	□□□□□ -1.99
CTF4	YPR135W	WHI3	P34761	661 aa	Known RBP	2.61	□□□□□ -1.99
CTF4	YPR135W	ECL1	P48235	211 aa		2.61	□□□□□ -1.99
CTF4	YPR135W	LYS4	P49367	693 aa	Predicted RBP	2.61	□□□□□ -1.99
CTF4	YPR135W	AIM46	P38885	310 aa		2.61	□□□□□ -1.99
CTF4	YPR135W	NPR2	P39923	615 aa		2.61	□□□□□ -1.99
CTF4	YPR135W	YNR029C	P53729	429 aa	Known RBP	2.61	□□□□□ -1.99
CTF4	YPR135W	TTI1	P36097	1038 aa		2.61	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 31.3 ms