RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	PHO87	P25360	923 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	UBP12	P39538	1254 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	QDR1	P40475	563 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	MAD1	P40957	749 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	CTH1	P47976	325 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	BDF2	Q07442	638 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	YGR161W-C	Q3E744	92 aa		4.89	□□□□□ -1.63
PUB1	YNL016W	RTC1	Q08281	1341 aa		4.88	□□□□□ -1.63
PUB1	YNL016W	MNN1	P39106	762 aa		4.88	□□□□□ -1.63
PUB1	YNL016W	YJR142W	P47173	342 aa		4.88	□□□□□ -1.63
PUB1	YNL016W	ROM1	P53046	1155 aa		4.88	□□□□□ -1.63
PUB1	YNL016W	YNL115C	P53925	644 aa		4.88	□□□□□ -1.63
PUB1	YNL016W	BRE1	Q07457	700 aa	Known RBP	4.88	□□□□□ -1.63
PUB1	YNL016W	YDL121C	Q07541	149 aa		4.88	□□□□□ -1.63
PUB1	YNL016W	FUR4	P05316	633 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	HAP4	P14064	554 aa		4.87	□□□□□ -1.63
PUB1	YNL016W	VMA4	P22203	233 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
PUB1	YNL016W	PAF1	P38351	445 aa		4.87	□□□□□ -1.63
PUB1	YNL016W	GLO3	P38682	493 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	BOI2	P39969	1040 aa		4.87	□□□□□ -1.63
PUB1	YNL016W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
PUB1	YNL016W	YJL181W	P46987	611 aa		4.87	□□□□□ -1.63
PUB1	YNL016W	RCM1	P53972	490 aa		4.87	□□□□□ -1.63
PUB1	YNL016W	UTP14	Q04500	899 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	ESF1	Q06344	628 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	CDC53	Q12018	815 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	WRS1	Q12109	432 aa	Known RBP	4.87	□□□□□ -1.63
PUB1	YNL016W	MCM2	P29469	868 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	MNN4	P36044	1178 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	TAT2	P38967	592 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	EMP47	P43555	445 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	TY4A-J	P47023	414 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	SPR28	Q04921	423 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	PPM2	Q08282	695 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	RSF2	P46974	1380 aa		4.86	□□□□□ -1.63
PUB1	YNL016W	PHO4	P07270	312 aa	Known RBP	4.85	□□□□□ -1.63
PUB1	YNL016W	PRP40	P33203	583 aa	Known RBP	4.85	□□□□□ -1.63
PUB1	YNL016W	ACS2	P52910	683 aa	Known RBP	4.85	□□□□□ -1.63
PUB1	YNL016W	TMA64	Q04600	565 aa	Known RBP	4.85	□□□□□ -1.63
PUB1	YNL016W	PUN1	Q06991	263 aa		4.85	□□□□□ -1.63
PUB1	YNL016W	YOR131C	Q12486	218 aa		4.85	□□□□□ -1.63
PUB1	YNL016W	LSO1	Q3E827	93 aa		4.85	□□□□□ -1.63
PUB1	YNL016W	ADE6	P38972	1358 aa	Known RBP	4.84	□□□□□ -1.63
PUB1	YNL016W	SPT2	P06843	333 aa	Predicted RBP	4.84	□□□□□ -1.63
PUB1	YNL016W	TRM1	P15565	570 aa	Known RBP	4.84	□□□□□ -1.63
PUB1	YNL016W	GAL11	P19659	1081 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	SLY41	P22215	453 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	PPH3	P32345	308 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	ISF1	P32488	338 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	YMR187C	Q03236	431 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	CEF1	Q03654	590 aa	Predicted RBP	4.84	□□□□□ -1.63
PUB1	YNL016W	GPI13	Q07830	1017 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	GAS4	Q08271	471 aa		4.84	□□□□□ -1.63
PUB1	YNL016W	MET6	P05694	767 aa	Known RBP	4.83	□□□□□ -1.64
PUB1	YNL016W	PWP2	P25635	923 aa	Known RBP	4.83	□□□□□ -1.64
PUB1	YNL016W	SEC6	P32844	805 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	RPT1	P33299	467 aa	Known RBP	4.83	□□□□□ -1.64
PUB1	YNL016W	MNR2	P35724	969 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	MSH4	P40965	878 aa	Predicted RBP	4.83	□□□□□ -1.64
PUB1	YNL016W	SPR3	P41901	512 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	KIP3	P53086	805 aa	Known RBP	4.83	□□□□□ -1.64
PUB1	YNL016W	TRS120	Q04183	1289 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	TDA6	Q06466	467 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	YRF1-3	P0CX14	1859 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	YRF1-7	P0CX15	1859 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	YRF1-6	P53819	1859 aa		4.83	□□□□□ -1.64
PUB1	YNL016W	KAR1	P11927	433 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	YEF3	P16521	1044 aa	Known RBP	4.82	□□□□□ -1.64
PUB1	YNL016W	VPS24	P36095	224 aa	Known RBP	4.82	□□□□□ -1.64
PUB1	YNL016W	YKR075C	P36155	307 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	BOI1	P38041	980 aa	Known RBP	4.82	□□□□□ -1.64
PUB1	YNL016W	YEN1	P40028	759 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	ATG3	P40344	310 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	NUP82	P40368	713 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	APL6	P46682	809 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	DNM1	P54861	757 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	NAM8	Q00539	523 aa	Known RBP	4.82	□□□□□ -1.64
PUB1	YNL016W	TAF8	Q03750	510 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	UTP13	Q05946	817 aa	Known RBP	4.82	□□□□□ -1.64
PUB1	YNL016W	NKP1	Q12493	238 aa		4.82	□□□□□ -1.64
PUB1	YNL016W	COB	P00163	385 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	RPA135	P22138	1203 aa	Known RBP	4.81	□□□□□ -1.64
PUB1	YNL016W	GRX7	P38068	203 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	SBE2	P42223	864 aa	Known RBP	4.81	□□□□□ -1.64
PUB1	YNL016W	MTO1	P53070	669 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	HUL5	P53119	910 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	ITC1	P53125	1264 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	ECM16	Q04217	1267 aa	Known RBP	4.81	□□□□□ -1.64
PUB1	YNL016W	FRA1	Q07825	749 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	SNF2	P22082	1703 aa		4.81	□□□□□ -1.64
PUB1	YNL016W	RAD2	P07276	1031 aa		4.8	□□□□□ -1.64
PUB1	YNL016W	MRC1	P25588	1096 aa		4.8	□□□□□ -1.64
PUB1	YNL016W	YKL133C	P36066	463 aa		4.8	□□□□□ -1.64
PUB1	YNL016W	ERP2	P39704	215 aa		4.8	□□□□□ -1.64
PUB1	YNL016W	KRI1	P42846	591 aa	Known RBP	4.8	□□□□□ -1.64
PUB1	YNL016W	DAK2	P43550	591 aa		4.8	□□□□□ -1.64
PUB1	YNL016W	PUS6	P53294	404 aa		4.8	□□□□□ -1.64
PUB1	YNL016W	GIR2	Q03768	265 aa	Predicted RBP	4.8	□□□□□ -1.64
PUB1	YNL016W	TSC13	Q99190	310 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 35.7 ms