RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeast

Gene NME1, Length 340 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NME1	NME1	SEC23	P15303	768 aa	Known RBP	11.78	□□□□□ -0.52
NME1	NME1	GUP1	P53154	560 aa		11.78	□□□□□ -0.52
NME1	NME1	NEO1	P40527	1151 aa		11.76	□□□□□ -0.53
NME1	NME1	YGR053C	P53234	283 aa		11.76	□□□□□ -0.53
NME1	NME1	HTS1	P07263	546 aa	Known RBP	11.75	□□□□□ -0.53
NME1	NME1	LEM3	P42838	414 aa		11.75	□□□□□ -0.53
NME1	NME1	SRP40	P32583	406 aa	Predicted RBP	11.74	□□□□□ -0.53
NME1	NME1	EXO5	P38289	585 aa		11.73	□□□□□ -0.53
NME1	NME1	HDA2	Q06629	674 aa		11.73	□□□□□ -0.53
NME1	NME1	VMA4	P22203	233 aa	Known RBP	11.72	□□□□□ -0.53
NME1	NME1	HAS1	Q03532	505 aa	Known RBP	11.72	□□□□□ -0.53
NME1	NME1	PRI2	P20457	528 aa		11.71	□□□□□ -0.53
NME1	NME1	GNP1	P48813	663 aa		11.71	□□□□□ -0.53
NME1	NME1	SOK2	P53438	785 aa	Predicted RBP	11.71	□□□□□ -0.53
NME1	NME1	OPI10	Q08202	246 aa		11.71	□□□□□ -0.53
NME1	NME1	FAL1	Q12099	399 aa	Known RBP	11.71	□□□□□ -0.53
NME1	NME1	PDC5	P16467	563 aa	Known RBP	11.69	□□□□□ -0.54
NME1	NME1	KNS1	P32350	737 aa	Predicted RBP	11.69	□□□□□ -0.54
NME1	NME1	ENT3	P47160	408 aa		11.69	□□□□□ -0.54
NME1	NME1	UTP22	P53254	1237 aa	Predicted RBP	11.69	□□□□□ -0.54
NME1	NME1	SIW14	P53965	281 aa		11.69	□□□□□ -0.54
NME1	NME1	TDA5	Q06417	326 aa	Known RBP	11.69	□□□□□ -0.54
NME1	NME1	YIG1	Q08956	461 aa		11.69	□□□□□ -0.54
NME1	NME1	GRX1	P25373	110 aa	Known RBP	11.68	□□□□□ -0.54
NME1	NME1	GAR1	P28007	205 aa	Known RBP	11.68	□□□□□ -0.54
NME1	NME1	RDH54	P38086	958 aa		11.68	□□□□□ -0.54
NME1	NME1	KRI1	P42846	591 aa	Known RBP	11.68	□□□□□ -0.54
NME1	NME1	IOC3	P43596	787 aa		11.68	□□□□□ -0.54
NME1	NME1	MTR4	P47047	1073 aa	Known RBP	11.68	□□□□□ -0.54
NME1	NME1	GPM1	P00950	247 aa	Known RBP	11.67	□□□□□ -0.54
NME1	NME1	TY1A-LR4	P0C2I8	440 aa	Known RBP	11.67	□□□□□ -0.54
NME1	NME1	TY1A-DR6	P0CX70	440 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-ER1	P0CX71	440 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-LR2	P0CX72	440 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-PL	P0CX73	440 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-JR1	P0CX74	440 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-LR3	P0CX75	440 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-ML2	P0CX76	440 aa		11.67	□□□□□ -0.54
NME1	NME1	HEM13	P11353	328 aa	Known RBP	11.67	□□□□□ -0.54
NME1	NME1	YKL091C	P33324	310 aa	Known RBP	11.67	□□□□□ -0.54
NME1	NME1	EEB1	Q02891	456 aa		11.67	□□□□□ -0.54
NME1	NME1	SPO71	Q03868	1245 aa		11.67	□□□□□ -0.54
NME1	NME1	NSE3	Q05541	303 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-GR1	Q12085	440 aa		11.67	□□□□□ -0.54
NME1	NME1	SLP1	Q12232	587 aa		11.67	□□□□□ -0.54
NME1	NME1	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	11.67	□□□□□ -0.54
NME1	NME1	TY1A-OL	Q92392	440 aa	Known RBP	11.67	□□□□□ -0.54
NME1	NME1	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	11.66	□□□□□ -0.54	not detected
NME1	NME1	STI1	P15705	589 aa	Known RBP RIP-Chip data	11.66	□□□□□ -0.54	not detected
NME1	NME1	GIP2	P40036	548 aa		11.66	□□□□□ -0.54
NME1	NME1	BAS1	P22035	811 aa		11.65	□□□□□ -0.54
NME1	NME1	CDC53	Q12018	815 aa	Known RBP	11.65	□□□□□ -0.54
NME1	NME1	GIS4	Q04233	774 aa		11.64	□□□□□ -0.55
NME1	NME1	REC8	Q12188	680 aa		11.64	□□□□□ -0.55
NME1	NME1	ARL1	P38116	183 aa	Known RBP	11.63	□□□□□ -0.55
NME1	NME1	ATG14	P38270	344 aa		11.63	□□□□□ -0.55
NME1	NME1	HXT13	P39924	564 aa		11.63	□□□□□ -0.55
NME1	NME1	SPF1	P39986	1215 aa	Known RBP	11.63	□□□□□ -0.55
NME1	NME1	TYW3	P53177	273 aa		11.63	□□□□□ -0.55
NME1	NME1	HXT17	P53631	564 aa		11.63	□□□□□ -0.55
NME1	NME1	HXT15	P54854	567 aa		11.63	□□□□□ -0.55
NME1	NME1	NAN1	Q02931	896 aa	Known RBP	11.63	□□□□□ -0.55
NME1	NME1	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	11.63	□□□□□ -0.55	not detected
NME1	NME1	SPO20	Q04359	397 aa		11.63	□□□□□ -0.55
NME1	NME1	YOR131C	Q12486	218 aa		11.63	□□□□□ -0.55
NME1	NME1	DED1	P06634	604 aa	Known RBP	11.62	□□□□□ -0.55
NME1	NME1	NAR1	P23503	491 aa	Known RBP	11.62	□□□□□ -0.55
NME1	NME1	PAN5	P38787	379 aa		11.62	□□□□□ -0.55
NME1	NME1	ROD1	Q02805	837 aa		11.62	□□□□□ -0.55
NME1	NME1	EST2	Q06163	884 aa		11.62	□□□□□ -0.55
NME1	NME1	TRP2	P00899	507 aa	Known RBP	11.61	□□□□□ -0.55
NME1	NME1	LYP1	P32487	611 aa		11.61	□□□□□ -0.55
NME1	NME1	RER2	P35196	286 aa		11.61	□□□□□ -0.55
NME1	NME1	ALG14	P38242	237 aa		11.61	□□□□□ -0.55
NME1	NME1	NEM1	P38757	446 aa		11.61	□□□□□ -0.55
NME1	NME1	OSW7	P43611	510 aa		11.61	□□□□□ -0.55
NME1	NME1	GCV1	P48015	400 aa		11.61	□□□□□ -0.55
NME1	NME1	UTP5	Q04177	643 aa	Known RBP	11.61	□□□□□ -0.55
NME1	NME1	GBP2	P25555	427 aa	Known RBP RIP-Chip data	11.6	□□□□□ -0.55	not detected
NME1	NME1	ADD66	P36040	267 aa		11.6	□□□□□ -0.55
NME1	NME1	YKL069W	P36088	180 aa		11.6	□□□□□ -0.55
NME1	NME1	TED1	P40533	473 aa		11.6	□□□□□ -0.55
NME1	NME1	SLS1	P42900	643 aa		11.6	□□□□□ -0.55
NME1	NME1	JJJ3	P47138	172 aa		11.6	□□□□□ -0.55
NME1	NME1	MEC3	Q02574	474 aa		11.6	□□□□□ -0.55
NME1	NME1	PGM2	P37012	569 aa	Known RBP	11.59	□□□□□ -0.55
NME1	NME1	BDF2	Q07442	638 aa		11.59	□□□□□ -0.55
NME1	NME1	RAD4	P14736	754 aa		11.58	□□□□□ -0.56
NME1	NME1	SAC7	P17121	654 aa		11.58	□□□□□ -0.56
NME1	NME1	NMD2	P38798	1089 aa	Known RBP	11.58	□□□□□ -0.56
NME1	NME1	TAT2	P38967	592 aa		11.58	□□□□□ -0.56
NME1	NME1	YLL054C	Q12244	843 aa		11.58	□□□□□ -0.56
NME1	NME1	MKK2	P32491	506 aa		11.57	□□□□□ -0.56
NME1	NME1	POL5	P39985	1022 aa	Known RBP	11.57	□□□□□ -0.56
NME1	NME1	FAR11	P53917	953 aa		11.57	□□□□□ -0.56
NME1	NME1	RPN4	Q03465	531 aa		11.57	□□□□□ -0.56
NME1	NME1	YDL176W	Q12027	708 aa		11.57	□□□□□ -0.56
NME1	NME1	REI1	P38344	393 aa	Predicted RBP	11.56	□□□□□ -0.56
NME1	NME1	DPH6	Q12429	685 aa		11.56	□□□□□ -0.56
NME1	NME1	AGP1	P25376	633 aa		11.55	□□□□□ -0.56

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms