RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 ZC3H4Q9UPT8 1303 aaKnown RBP8.36□□□□□ -1.07
SCN1A-211ENST00000635893 ZSCAN1Q8NBB4 408 aa8.36□□□□□ -1.07
SCN1A-211ENST00000635893 PROCA1Q8NCQ7 364 aaPredicted RBP8.36□□□□□ -1.07
SCN1A-211ENST00000635893 TSEN34Q9BSV6 310 aaKnown RBP8.36□□□□□ -1.07
SCN1A-211ENST00000635893 FAM117AQ9C073 453 aa8.36□□□□□ -1.07
SCN1A-211ENST00000635893 CDV3Q9UKY7 258 aaKnown RBP8.36□□□□□ -1.07
SCN1A-211ENST00000635893 ATP1B4Q9UN42 357 aaPredicted RBP8.36□□□□□ -1.07
SCN1A-211ENST00000635893 VSIG8P0DPA2 414 aa8.35□□□□□ -1.07
SCN1A-211ENST00000635893 SOS2Q07890 1332 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-211ENST00000635893 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-211ENST00000635893 NR6A1Q15406 480 aa8.34□□□□□ -1.07
SCN1A-211ENST00000635893 FBXO31Q5XUX0 539 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-211ENST00000635893 SLC10A4Q96EP9 437 aa8.34□□□□□ -1.07
SCN1A-211ENST00000635893 PGPEP1Q9NXJ5 209 aa8.34□□□□□ -1.07
SCN1A-211ENST00000635893 PPP1R26Q5T8A7 1209 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-211ENST00000635893 ZBTB33Q86T24 672 aa8.33□□□□□ -1.08
SCN1A-211ENST00000635893 BCANQ96GW7 911 aa8.33□□□□□ -1.08
SCN1A-211ENST00000635893 KCTD15Q96SI1 283 aaPredicted RBP8.33□□□□□ -1.08
SCN1A-211ENST00000635893 PPFIA3O75145 1194 aa8.32□□□□□ -1.08
SCN1A-211ENST00000635893 AP1G2O75843 785 aa8.32□□□□□ -1.08
SCN1A-211ENST00000635893 PTK2Q05397 1052 aa8.32□□□□□ -1.08
SCN1A-211ENST00000635893 DNMT3LQ9UJW3 386 aa8.32□□□□□ -1.08
SCN1A-211ENST00000635893 GPSM3Q9Y4H4 160 aa8.32□□□□□ -1.08
SCN1A-211ENST00000635893 DHX9Q08211 1270 aaKnown RBP8.31□□□□□ -1.08
SCN1A-211ENST00000635893 Q6ZVU0 165 aa8.31□□□□□ -1.08
SCN1A-211ENST00000635893 TTLL8A6PVC2 850 aa8.3□□□□□ -1.08
SCN1A-211ENST00000635893 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.3□□□□□ -1.08
SCN1A-211ENST00000635893 PNMA1Q8ND90 353 aa8.3□□□□□ -1.08
SCN1A-211ENST00000635893 CBLBQ13191 982 aa8.29□□□□□ -1.08
SCN1A-211ENST00000635893 OCSTAMPQ9BR26 566 aa8.29□□□□□ -1.08
SCN1A-211ENST00000635893 SPINT1O43278 529 aa8.28□□□□□ -1.08
SCN1A-211ENST00000635893 INTS6LQ5JSJ4 861 aaKnown RBP8.28□□□□□ -1.08
SCN1A-211ENST00000635893 ADAM32Q8TC27 787 aa8.28□□□□□ -1.08
SCN1A-211ENST00000635893 USP17L8P0C7I0 530 aa8.27□□□□□ -1.09
SCN1A-211ENST00000635893 EPS8L1Q8TE68 723 aa8.27□□□□□ -1.09
SCN1A-211ENST00000635893 NBPF20Q3BBV1 942 aa8.26□□□□□ -1.09
SCN1A-211ENST00000635893 HMX1Q9NP08 348 aaPredicted RBP8.26□□□□□ -1.09
SCN1A-211ENST00000635893 FIGNL2A6NMB9 653 aa8.25□□□□□ -1.09
SCN1A-211ENST00000635893 RFC5P40937 340 aa8.25□□□□□ -1.09
SCN1A-211ENST00000635893 PTSQ03393 145 aa8.25□□□□□ -1.09
SCN1A-211ENST00000635893 GOPCQ9HD26 462 aa8.25□□□□□ -1.09
SCN1A-211ENST00000635893 DZIP3Q86Y13 1208 aaKnown RBP8.23□□□□□ -1.09
SCN1A-211ENST00000635893 AGBL1Q96MI9 1066 aa8.23□□□□□ -1.09
SCN1A-211ENST00000635893 RELBQ01201 579 aa8.22□□□□□ -1.09
SCN1A-211ENST00000635893 PCMTD1Q96MG8 357 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-211ENST00000635893 TMEM259Q4ZIN3 620 aa8.21□□□□□ -1.1
SCN1A-211ENST00000635893 CCDC155Q8N6L0 562 aa8.21□□□□□ -1.1
SCN1A-211ENST00000635893 NANOS1Q8WY41 292 aaKnown RBP8.21□□□□□ -1.1
SCN1A-211ENST00000635893 INSM2Q96T92 566 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-211ENST00000635893 TMPRSS4Q9NRS4 437 aa8.21□□□□□ -1.1
SCN1A-211ENST00000635893 CTSOP43234 321 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-211ENST00000635893 RAB15P59190 212 aa8.2□□□□□ -1.1
SCN1A-211ENST00000635893 GPR161Q8N6U8 529 aaKnown RBP8.2□□□□□ -1.1
SCN1A-211ENST00000635893 ZNF784Q8NCA9 323 aaPredicted RBP8.2□□□□□ -1.1
SCN1A-211ENST00000635893 SLC35F4A4IF30 521 aa8.19□□□□□ -1.1
SCN1A-211ENST00000635893 ESPNB1AK53 854 aa8.19□□□□□ -1.1
SCN1A-211ENST00000635893 ERVH48-1M5A8F1 160 aa8.19□□□□□ -1.1
SCN1A-211ENST00000635893 ADH1AP07327 375 aa8.19□□□□□ -1.1
SCN1A-211ENST00000635893 TRIM34Q9BYJ4 488 aa8.19□□□□□ -1.1
SCN1A-211ENST00000635893 POLMQ9NP87 494 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-211ENST00000635893 LILRA1O75019 489 aa8.18□□□□□ -1.1
SCN1A-211ENST00000635893 SEPT12Q8IYM1 358 aa8.18□□□□□ -1.1
SCN1A-211ENST00000635893 TRIM52Q96A61 297 aa8.18□□□□□ -1.1
SCN1A-211ENST00000635893 ZNF395Q9H8N7 513 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-211ENST00000635893 PTGIRP43119 386 aa8.17□□□□□ -1.1
SCN1A-211ENST00000635893 KRT76Q01546 638 aa8.17□□□□□ -1.1
SCN1A-211ENST00000635893 RNF217Q8TC41 542 aa8.17□□□□□ -1.1
SCN1A-211ENST00000635893 CNTNAP3BQ96NU0 1288 aa8.17□□□□□ -1.1
SCN1A-211ENST00000635893 CNTNAP3Q9BZ76 1288 aa8.17□□□□□ -1.1
SCN1A-211ENST00000635893 ITGA6P23229 1130 aa8.16□□□□□ -1.1
SCN1A-211ENST00000635893 ADD1P35611 737 aaKnown RBP8.16□□□□□ -1.1
SCN1A-211ENST00000635893 COL25A1Q9BXS0 654 aaPredicted RBP8.16□□□□□ -1.1
SCN1A-211ENST00000635893 ZBBXA8MT70 800 aa8.15□□□□□ -1.1
SCN1A-211ENST00000635893 NEUROD2Q15784 382 aa8.15□□□□□ -1.1
SCN1A-211ENST00000635893 KDF1Q8NAX2 398 aaPredicted RBP8.15□□□□□ -1.1
SCN1A-211ENST00000635893 VWA5B2Q8N398 1253 aa8.14□□□□□ -1.11
SCN1A-211ENST00000635893 IL27Q8NEV9 243 aa8.14□□□□□ -1.11
SCN1A-211ENST00000635893 SLC24A1O60721 1099 aa8.13□□□□□ -1.11
SCN1A-211ENST00000635893 FOXD4L5Q5VV16 416 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-211ENST00000635893 SV2AQ7L0J3 742 aa8.13□□□□□ -1.11
SCN1A-211ENST00000635893 CCDC125Q86Z20 511 aa8.13□□□□□ -1.11
SCN1A-211ENST00000635893 GJD4Q96KN9 370 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-211ENST00000635893 CYLDQ9NQC7 956 aa8.13□□□□□ -1.11
SCN1A-211ENST00000635893 PCDHB9Q9Y5E1 797 aa8.13□□□□□ -1.11
SCN1A-211ENST00000635893 SENP3-EIF4A1A0A087X0R7 540 aa8.12□□□□□ -1.11
SCN1A-211ENST00000635893 CDC14CA4D256 554 aa8.12□□□□□ -1.11
SCN1A-211ENST00000635893 GIGYF1O75420 1035 aaPredicted RBP8.12□□□□□ -1.11
SCN1A-211ENST00000635893 FBXO45P0C2W1 286 aa8.12□□□□□ -1.11
SCN1A-211ENST00000635893 KCNMA1Q12791 1236 aa8.11□□□□□ -1.11
SCN1A-211ENST00000635893 RNFT1Q5M7Z0 435 aa8.11□□□□□ -1.11
SCN1A-211ENST00000635893 LYSMD3Q7Z3D4 306 aa8.11□□□□□ -1.11
SCN1A-211ENST00000635893 RNF144AP50876 292 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-211ENST00000635893 MCCD1P59942 119 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-211ENST00000635893 ATP5J2-PTCD1G3V325 749 aa8.09□□□□□ -1.11
SCN1A-211ENST00000635893 RNF20Q5VTR2 975 aa8.09□□□□□ -1.11
SCN1A-211ENST00000635893 ADAMTS8Q9UP79 889 aa8.09□□□□□ -1.11
SCN1A-211ENST00000635893 SLURP2P0DP57 97 aa8.08□□□□□ -1.12
SCN1A-211ENST00000635893 ZNF385CQ66K41 422 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-211ENST00000635893 BANK1Q8NDB2 785 aa8.08□□□□□ -1.12
SCN1A-211ENST00000635893 ZNF592Q92610 1267 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms