RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 AEBP2Q6ZN18 517 aaPredicted RBP24.18■■□□□ 1.46
SCN1A-211ENST00000635893 CHIC1Q5VXU3 224 aa23.09■■□□□ 1.29
SCN1A-211ENST00000635893 SENP3Q9H4L4 574 aaPredicted RBP20.65■□□□□ 0.9
SCN1A-211ENST00000635893 PHF23Q9BUL5 403 aaPredicted RBP20.38■□□□□ 0.85
SCN1A-211ENST00000635893 FOXD1Q16676 465 aa19.21■□□□□ 0.67
SCN1A-211ENST00000635893 PLPPR3Q6T4P5 718 aa18.51■□□□□ 0.55
SCN1A-211ENST00000635893 PPP6R1Q9UPN7 881 aa18.03■□□□□ 0.48
SCN1A-211ENST00000635893 PIAS4Q8N2W9 510 aaPredicted RBP17.98■□□□□ 0.47
SCN1A-211ENST00000635893 MSH5O43196 834 aa17.97■□□□□ 0.47
SCN1A-211ENST00000635893 ADRA2BP18089 450 aa17.97■□□□□ 0.47
SCN1A-211ENST00000635893 POTEDQ86YR6 584 aa17.33■□□□□ 0.36
SCN1A-211ENST00000635893 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
SCN1A-211ENST00000635893 MAPK8IP2Q13387 824 aaPredicted RBP16.48■□□□□ 0.23
SCN1A-211ENST00000635893 DMRT2Q9Y5R5 561 aa16.38■□□□□ 0.21
SCN1A-211ENST00000635893 PPP4R3CPQ6ZMV5 832 aa16.22■□□□□ 0.19
SCN1A-211ENST00000635893 CNKSR2Q8WXI2 1034 aa15.91■□□□□ 0.14
SCN1A-211ENST00000635893 HOXD11P31277 338 aaPredicted RBP15.83■□□□□ 0.12
SCN1A-211ENST00000635893 RNF216Q9NWF9 866 aaPredicted RBP15.74■□□□□ 0.11
SCN1A-211ENST00000635893 DCAF8L1A6NGE4 600 aa15.69■□□□□ 0.1
SCN1A-211ENST00000635893 NCBP3Q53F19 620 aaKnown RBP15.66■□□□□ 0.1
SCN1A-211ENST00000635893 NPM3O75607 178 aaKnown RBP15.39■□□□□ 0.05
SCN1A-211ENST00000635893 CACNB1Q02641 598 aaPredicted RBP15.35■□□□□ 0.05
SCN1A-211ENST00000635893 RNF39Q9H2S5 420 aa15.33■□□□□ 0.04
SCN1A-211ENST00000635893 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
SCN1A-211ENST00000635893 KCNA4P22459 653 aa15.18■□□□□ 0.02
SCN1A-211ENST00000635893 C1QBPQ07021 282 aaKnown RBP15.13■□□□□ 0.01
SCN1A-211ENST00000635893 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.08■□□□□ 0
SCN1A-211ENST00000635893 U3KPZ7 1027 aaPredicted RBP14.75□□□□□ -0.05
SCN1A-211ENST00000635893 SLC4A2P04920 1241 aa14.67□□□□□ -0.06
SCN1A-211ENST00000635893 SPINK5Q9NQ38 1064 aaPredicted RBP14.5□□□□□ -0.09
SCN1A-211ENST00000635893 CAPN15O75808 1086 aa14.49□□□□□ -0.09
SCN1A-211ENST00000635893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.42□□□□□ -0.1
SCN1A-211ENST00000635893 HNRNPUL2Q1KMD3 747 aaKnown RBP14.42□□□□□ -0.1
SCN1A-211ENST00000635893 APLP2Q06481 763 aa14.41□□□□□ -0.1
SCN1A-211ENST00000635893 DSG3P32926 999 aa14.38□□□□□ -0.11
SCN1A-211ENST00000635893 SLC4A1APQ9BWU0 796 aaKnown RBP14.37□□□□□ -0.11
SCN1A-211ENST00000635893 SAMD1Q6SPF0 538 aaPredicted RBP14.34□□□□□ -0.11
SCN1A-211ENST00000635893 TRHP20396 242 aaPredicted RBP14.28□□□□□ -0.12
SCN1A-211ENST00000635893 ZNF219Q9P2Y4 722 aaPredicted RBP14.28□□□□□ -0.12
SCN1A-211ENST00000635893 MYCNP04198 464 aaPredicted RBP14.26□□□□□ -0.13
SCN1A-211ENST00000635893 FOXD4L1Q9NU39 408 aa14.16□□□□□ -0.14
SCN1A-211ENST00000635893 ABCB7O75027 752 aa14.14□□□□□ -0.15
SCN1A-211ENST00000635893 ZBTB22O15209 634 aa13.95□□□□□ -0.18
SCN1A-211ENST00000635893 POLA2Q14181 598 aa13.92□□□□□ -0.18
SCN1A-211ENST00000635893 ATF5Q9Y2D1 282 aaPredicted RBP13.88□□□□□ -0.19
SCN1A-211ENST00000635893 RBM42Q9BTD8 480 aaKnown RBP13.76□□□□□ -0.21
SCN1A-211ENST00000635893 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
SCN1A-211ENST00000635893 ZBTB12Q9Y330 459 aaPredicted RBP13.69□□□□□ -0.22
SCN1A-211ENST00000635893 POTEHQ6S545 545 aa13.61□□□□□ -0.23
SCN1A-211ENST00000635893 OSCARQ8IYS5 282 aa13.46□□□□□ -0.25
SCN1A-211ENST00000635893 AKT1S1Q96B36 256 aa13.45□□□□□ -0.26
SCN1A-211ENST00000635893 CSRNP3Q8WYN3 585 aa13.41□□□□□ -0.26
SCN1A-211ENST00000635893 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
SCN1A-211ENST00000635893 FBLN2P98095 1184 aa13.38□□□□□ -0.27
SCN1A-211ENST00000635893 REM2Q8IYK8 340 aaPredicted RBP13.3□□□□□ -0.28
SCN1A-211ENST00000635893 EHMT2Q96KQ7 1210 aa13.28□□□□□ -0.28
SCN1A-211ENST00000635893 SPDYE2BA6NHP3 402 aa13.26□□□□□ -0.29
SCN1A-211ENST00000635893 SPDYE6P0CI01 402 aa13.26□□□□□ -0.29
SCN1A-211ENST00000635893 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
SCN1A-211ENST00000635893 SPDYE2Q495Y8 402 aa13.26□□□□□ -0.29
SCN1A-211ENST00000635893 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
SCN1A-211ENST00000635893 ZNF692Q9BU19 519 aaPredicted RBP13.11□□□□□ -0.31
SCN1A-211ENST00000635893 PIP4P2Q8N4L2 257 aa13.08□□□□□ -0.32
SCN1A-211ENST00000635893 SSUH2Q9Y2M2 353 aa13.08□□□□□ -0.32
SCN1A-211ENST00000635893 FXR2P51116 673 aaKnown RBP eCLIP13.03□□□□□ -0.32
SCN1A-211ENST00000635893 SPDYE1Q8NFV5 336 aaPredicted RBP13.01□□□□□ -0.33
SCN1A-211ENST00000635893 CLEC11AQ9Y240 323 aa12.96□□□□□ -0.33
SCN1A-211ENST00000635893 PABPN1Q86U42 306 aaKnown RBP eCLIP12.91□□□□□ -0.34
SCN1A-211ENST00000635893 HAX1O00165 279 aa12.83□□□□□ -0.36
SCN1A-211ENST00000635893 PRKAR2AP13861 404 aaKnown RBP12.82□□□□□ -0.36
SCN1A-211ENST00000635893 SP7Q8TDD2 431 aaPredicted RBP12.81□□□□□ -0.36
SCN1A-211ENST00000635893 PRR29P0C7W0 189 aa12.77□□□□□ -0.37
SCN1A-211ENST00000635893 SPDYE4A6NLX3 237 aa12.71□□□□□ -0.37
SCN1A-211ENST00000635893 CHADLQ6NUI6 762 aa12.68□□□□□ -0.38
SCN1A-211ENST00000635893 EVX2Q03828 476 aa12.64□□□□□ -0.39
SCN1A-211ENST00000635893 C19orf67A6NJJ6 358 aa12.61□□□□□ -0.39
SCN1A-211ENST00000635893 STAG3Q9UJ98 1225 aa12.61□□□□□ -0.39
SCN1A-211ENST00000635893 FARP1Q9Y4F1 1045 aaPredicted RBP12.53□□□□□ -0.4
SCN1A-211ENST00000635893 CREBZFQ9NS37 354 aa12.46□□□□□ -0.41
SCN1A-211ENST00000635893 CD44P16070 742 aaKnown RBP12.42□□□□□ -0.42
SCN1A-211ENST00000635893 PROM2Q8N271 834 aa12.42□□□□□ -0.42
SCN1A-211ENST00000635893 GABBR2O75899 941 aa12.39□□□□□ -0.43
SCN1A-211ENST00000635893 CLCN6P51797 869 aa12.29□□□□□ -0.44
SCN1A-211ENST00000635893 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
SCN1A-211ENST00000635893 ZRANB1Q9UGI0 708 aa12.26□□□□□ -0.45
SCN1A-211ENST00000635893 MNX1P50219 401 aaPredicted RBP12.25□□□□□ -0.45
SCN1A-211ENST00000635893 ZNF579Q8NAF0 562 aaKnown RBP12.24□□□□□ -0.45
SCN1A-211ENST00000635893 PAK3O75914 559 aaPredicted RBP12.21□□□□□ -0.45
SCN1A-211ENST00000635893 FKBP8Q14318 412 aa12.16□□□□□ -0.46
SCN1A-211ENST00000635893 PLEKHG5O94827 1062 aa12.13□□□□□ -0.47
SCN1A-211ENST00000635893 MIER1Q8N108 512 aa12.12□□□□□ -0.47
SCN1A-211ENST00000635893 POTEIP0CG38 1075 aa12.11□□□□□ -0.47
SCN1A-211ENST00000635893 DCBLD2Q96PD2 775 aa12.09□□□□□ -0.47
SCN1A-211ENST00000635893 PHF12Q96QT6 1004 aa12.09□□□□□ -0.47
SCN1A-211ENST00000635893 GALR2O43603 387 aaPredicted RBP12.07□□□□□ -0.48
SCN1A-211ENST00000635893 PLCD3Q8N3E9 789 aa12.04□□□□□ -0.48
SCN1A-211ENST00000635893 LHX8Q68G74 356 aa12.02□□□□□ -0.49
SCN1A-211ENST00000635893 TSPYL2Q9H2G4 693 aaPredicted RBP12.02□□□□□ -0.49
SCN1A-211ENST00000635893 ZBTB47Q9UFB7 747 aaPredicted RBP11.96□□□□□ -0.49
SCN1A-211ENST00000635893 CCDC61Q9Y6R9 512 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms