RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 FAM83GA6ND36 823 aa19.79■□□□□ 0.76
LIMS3-206ENST00000631420 IL13P35225 146 aa19.79■□□□□ 0.76
LIMS3-206ENST00000631420 EIF4A2Q14240 407 aaKnown RBP19.79■□□□□ 0.76
LIMS3-206ENST00000631420 PRDM11Q9NQV5 511 aa19.79■□□□□ 0.76
LIMS3-206ENST00000631420 COL22A1Q8NFW1 1626 aaPredicted RBP19.79■□□□□ 0.76
LIMS3-206ENST00000631420 KIF24Q5T7B8 1368 aa19.79■□□□□ 0.76
LIMS3-206ENST00000631420 ADAMTS2O95450 1211 aa19.78■□□□□ 0.76
LIMS3-206ENST00000631420 FBXO41Q8TF61 875 aa19.78■□□□□ 0.76
LIMS3-206ENST00000631420 LTV1Q96GA3 475 aaPredicted RBP19.78■□□□□ 0.76
LIMS3-206ENST00000631420 ADAMTS8Q9UP79 889 aa19.78■□□□□ 0.76
LIMS3-206ENST00000631420 RTL1A6NKG5 1358 aa19.77■□□□□ 0.76
LIMS3-206ENST00000631420 U2SURPO15042 1029 aaKnown RBP19.76■□□□□ 0.75
LIMS3-206ENST00000631420 ABCA3Q99758 1704 aa19.76■□□□□ 0.75
LIMS3-206ENST00000631420 WDR43Q15061 677 aaKnown RBP eCLIP19.75■□□□□ 0.75
LIMS3-206ENST00000631420 NUDCQ9Y266 331 aa19.75■□□□□ 0.75
LIMS3-206ENST00000631420 LTN1O94822 1766 aa19.75■□□□□ 0.75
LIMS3-206ENST00000631420 SHPRHQ149N8 1683 aa19.74■□□□□ 0.75
LIMS3-206ENST00000631420 U2AF1L5P0DN76 240 aaPredicted RBP19.74■□□□□ 0.75
LIMS3-206ENST00000631420 U2AF1Q01081 240 aaKnown RBP eCLIP19.74■□□□□ 0.75
LIMS3-206ENST00000631420 ANKRD24Q8TF21 1146 aa19.74■□□□□ 0.75
LIMS3-206ENST00000631420 SPATA31A6Q5VVP1 1343 aa19.73■□□□□ 0.75
LIMS3-206ENST00000631420 EYA1Q99502 592 aa19.72■□□□□ 0.75
LIMS3-206ENST00000631420 BLMP54132 1417 aaPredicted RBP19.71■□□□□ 0.75
LIMS3-206ENST00000631420 COL18A1P39060 1754 aa19.71■□□□□ 0.75
LIMS3-206ENST00000631420 BTG4Q9NY30 223 aa19.7■□□□□ 0.74
LIMS3-206ENST00000631420 CAMTA1Q9Y6Y1 1673 aa19.7■□□□□ 0.74
LIMS3-206ENST00000631420 HMOX1P09601 288 aa19.7■□□□□ 0.74
LIMS3-206ENST00000631420 NBPF6Q5VWK0 638 aa19.7■□□□□ 0.74
LIMS3-206ENST00000631420 NBPF4Q96M43 638 aa19.7■□□□□ 0.74
LIMS3-206ENST00000631420 ERBB3P21860 1342 aa19.69■□□□□ 0.74
LIMS3-206ENST00000631420 LRP6O75581 1613 aa19.68■□□□□ 0.74
LIMS3-206ENST00000631420 SENP3-EIF4A1A0A087X0R7 540 aa19.68■□□□□ 0.74
LIMS3-206ENST00000631420 AEBP1Q8IUX7 1158 aa19.68■□□□□ 0.74
LIMS3-206ENST00000631420 CCDC146Q8IYE0 955 aa19.68■□□□□ 0.74
LIMS3-206ENST00000631420 USHBP1Q8N6Y0 703 aa19.68■□□□□ 0.74
LIMS3-206ENST00000631420 CSB-PGBD3P0DP91 1061 aa19.67■□□□□ 0.74
LIMS3-206ENST00000631420 SULT6B1Q6IMI4 303 aa19.67■□□□□ 0.74
LIMS3-206ENST00000631420 STRN4Q9NRL3 753 aa19.67■□□□□ 0.74
LIMS3-206ENST00000631420 EVA1CP58658 441 aa19.66■□□□□ 0.74
LIMS3-206ENST00000631420 C8orf37Q96NL8 207 aa19.66■□□□□ 0.74
LIMS3-206ENST00000631420 IGSF1Q8N6C5 1336 aa19.66■□□□□ 0.74
LIMS3-206ENST00000631420 LMO7Q8WWI1 1683 aa19.66■□□□□ 0.74
LIMS3-206ENST00000631420 YTHDC1Q96MU7 727 aaKnown RBP19.66■□□□□ 0.74
LIMS3-206ENST00000631420 RSPH6AQ9H0K4 717 aa19.66■□□□□ 0.74
LIMS3-206ENST00000631420 NLRP2Q9NX02 1062 aa19.66■□□□□ 0.74
LIMS3-206ENST00000631420 RGPD5Q99666 1765 aa19.65■□□□□ 0.74
LIMS3-206ENST00000631420 ABCC6O95255 1503 aa19.65■□□□□ 0.74
LIMS3-206ENST00000631420 LARP1Q6PKG0 1096 aaKnown RBP19.65■□□□□ 0.74
LIMS3-206ENST00000631420 NGLY1Q96IV0 654 aa19.65■□□□□ 0.74
LIMS3-206ENST00000631420 COL5A2P05997 1499 aaPredicted RBP19.64■□□□□ 0.73
LIMS3-206ENST00000631420 FCHSD2O94868 740 aa19.64■□□□□ 0.73
LIMS3-206ENST00000631420 PRKAR2BP31323 418 aa19.63■□□□□ 0.73
LIMS3-206ENST00000631420 MEX3CQ5U5Q3 659 aaKnown RBP19.63■□□□□ 0.73
LIMS3-206ENST00000631420 PLEKHF1Q96S99 279 aa19.63■□□□□ 0.73
LIMS3-206ENST00000631420 WDR17Q8IZU2 1322 aa19.63■□□□□ 0.73
LIMS3-206ENST00000631420 COL14A1Q05707 1796 aaKnown RBP19.63■□□□□ 0.73
LIMS3-206ENST00000631420 TOM1L2Q6ZVM7 507 aa19.62■□□□□ 0.73
LIMS3-206ENST00000631420 RUNDC1Q96C34 613 aa19.61■□□□□ 0.73
LIMS3-206ENST00000631420 PHACTR3Q96KR7 559 aa19.61■□□□□ 0.73
LIMS3-206ENST00000631420 RGPD1P0DJD0 1748 aa19.6■□□□□ 0.73
LIMS3-206ENST00000631420 SLIT2O94813 1529 aa19.6■□□□□ 0.73
LIMS3-206ENST00000631420 FNBP4Q8N3X1 1017 aaPredicted RBP19.6■□□□□ 0.73
LIMS3-206ENST00000631420 KDRP35968 1356 aa19.59■□□□□ 0.73
LIMS3-206ENST00000631420 APAF1O14727 1248 aa19.59■□□□□ 0.73
LIMS3-206ENST00000631420 HNRNPUQ00839 825 aaKnown RBP eCLIP19.58■□□□□ 0.73
LIMS3-206ENST00000631420 RGPD2P0DJD1 1756 aa19.58■□□□□ 0.72
LIMS3-206ENST00000631420 UNC5CLQ8IV45 518 aa19.57■□□□□ 0.72
LIMS3-206ENST00000631420 CARD10Q9BWT7 1032 aa19.57■□□□□ 0.72
LIMS3-206ENST00000631420 PNNQ9H307 717 aaKnown RBP19.57■□□□□ 0.72
LIMS3-206ENST00000631420 USP35Q9P2H5 1018 aa19.57■□□□□ 0.72
LIMS3-206ENST00000631420 SALL2Q9Y467 1007 aaPredicted RBP19.57■□□□□ 0.72
LIMS3-206ENST00000631420 TCP11L2Q8N4U5 519 aa19.57■□□□□ 0.72
LIMS3-206ENST00000631420 BCL9LQ86UU0 1499 aa19.57■□□□□ 0.72
LIMS3-206ENST00000631420 NCAPD2Q15021 1401 aa19.56■□□□□ 0.72
LIMS3-206ENST00000631420 USP21Q9UK80 565 aa19.56■□□□□ 0.72
LIMS3-206ENST00000631420 RRP7AQ9Y3A4 280 aaKnown RBP19.56■□□□□ 0.72
LIMS3-206ENST00000631420 AFF2P51816 1311 aa19.55■□□□□ 0.72
LIMS3-206ENST00000631420 PLCH1Q4KWH8 1693 aa19.55■□□□□ 0.72
LIMS3-206ENST00000631420 CRB1P82279 1406 aa19.55■□□□□ 0.72
LIMS3-206ENST00000631420 MAPK8IP3Q9UPT6 1336 aa19.54■□□□□ 0.72
LIMS3-206ENST00000631420 NEUROD2Q15784 382 aa19.54■□□□□ 0.72
LIMS3-206ENST00000631420 NEFMP07197 916 aa19.53■□□□□ 0.72
LIMS3-206ENST00000631420 MTHFSDQ2M296 383 aaKnown RBP19.53■□□□□ 0.72
LIMS3-206ENST00000631420 CCDC9Q9Y3X0 531 aaKnown RBP19.53■□□□□ 0.72
LIMS3-206ENST00000631420 TMPOP42166 694 aaKnown RBP19.52■□□□□ 0.71
LIMS3-206ENST00000631420 RAPGEF4Q8WZA2 1011 aa19.52■□□□□ 0.71
LIMS3-206ENST00000631420 SPATA31A1Q5TZJ5 1347 aa19.51■□□□□ 0.71
LIMS3-206ENST00000631420 NRAPQ86VF7 1730 aa19.51■□□□□ 0.71
LIMS3-206ENST00000631420 VPS72Q15906 364 aa19.51■□□□□ 0.71
LIMS3-206ENST00000631420 ILDR1Q86SU0 546 aaPredicted RBP19.51■□□□□ 0.71
LIMS3-206ENST00000631420 FAM208AQ9UK61 1670 aaKnown RBP19.51■□□□□ 0.71
LIMS3-206ENST00000631420 SPATA31A5Q5VU36 1347 aa19.51■□□□□ 0.71
LIMS3-206ENST00000631420 SPATA31A7Q8IWB4 1347 aa19.51■□□□□ 0.71
LIMS3-206ENST00000631420 TATP17735 454 aaPredicted RBP19.5■□□□□ 0.71
LIMS3-206ENST00000631420 RIPK4P57078 832 aa19.49■□□□□ 0.71
LIMS3-206ENST00000631420 NFE2L2Q16236 605 aa19.49■□□□□ 0.71
LIMS3-206ENST00000631420 MEGF6O75095 1541 aa19.49■□□□□ 0.71
LIMS3-206ENST00000631420 NWD2Q9ULI1 1742 aa19.49■□□□□ 0.71
LIMS3-206ENST00000631420 IL2RBP14784 551 aa19.49■□□□□ 0.71
LIMS3-206ENST00000631420 PLEKHO1Q53GL0 409 aaPredicted RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms