RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ANKRD26Q9UPS8 1709 aa26.38■■□□□ 1.81
UPF1-209ENST00000600310 ATRNO75882 1429 aa26.38■■□□□ 1.81
UPF1-209ENST00000600310 ABCC6O95255 1503 aa26.37■■□□□ 1.81
UPF1-209ENST00000600310 COL18A1P39060 1754 aa26.37■■□□□ 1.81
UPF1-209ENST00000600310 EVA1CP58658 441 aa26.36■■□□□ 1.81
UPF1-209ENST00000600310 VPS72Q15906 364 aa26.36■■□□□ 1.81
UPF1-209ENST00000600310 IP6K1Q92551 441 aa26.36■■□□□ 1.81
UPF1-209ENST00000600310 TNNT2P45379 298 aaPredicted RBP26.35■■□□□ 1.81
UPF1-209ENST00000600310 AMPHP49418 695 aa26.35■■□□□ 1.81
UPF1-209ENST00000600310 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.35■■□□□ 1.81
UPF1-209ENST00000600310 STRN4Q9NRL3 753 aa26.34■■□□□ 1.81
UPF1-209ENST00000600310 COL5A2P05997 1499 aaPredicted RBP26.34■■□□□ 1.81
UPF1-209ENST00000600310 NRAPQ86VF7 1730 aa26.34■■□□□ 1.81
UPF1-209ENST00000600310 KIF24Q5T7B8 1368 aa26.33■■□□□ 1.81
UPF1-209ENST00000600310 HOXC9P31274 260 aa26.33■■□□□ 1.81
UPF1-209ENST00000600310 POLKQ9UBT6 870 aa26.33■■□□□ 1.81
UPF1-209ENST00000600310 RTL1A6NKG5 1358 aa26.33■■□□□ 1.8
UPF1-209ENST00000600310 GJD4Q96KN9 370 aaPredicted RBP26.32■■□□□ 1.8
UPF1-209ENST00000600310 BLMP54132 1417 aaPredicted RBP26.31■■□□□ 1.8
UPF1-209ENST00000600310 LTN1O94822 1766 aa26.31■■□□□ 1.8
UPF1-209ENST00000600310 EMILIN1Q9Y6C2 1016 aa26.31■■□□□ 1.8
UPF1-209ENST00000600310 RXRBP28702 533 aa26.3■■□□□ 1.8
UPF1-209ENST00000600310 RBM6P78332 1123 aaKnown RBP26.3■■□□□ 1.8
UPF1-209ENST00000600310 CNGB1Q14028 1251 aaPredicted RBP26.29■■□□□ 1.8
UPF1-209ENST00000600310 LARP1Q6PKG0 1096 aaKnown RBP26.29■■□□□ 1.8
UPF1-209ENST00000600310 CCDC9Q9Y3X0 531 aaKnown RBP26.29■■□□□ 1.8
UPF1-209ENST00000600310 FLT4P35916 1363 aa26.29■■□□□ 1.8
UPF1-209ENST00000600310 SPATA31A5Q5VU36 1347 aa26.28■■□□□ 1.8
UPF1-209ENST00000600310 SPATA31A7Q8IWB4 1347 aa26.28■■□□□ 1.8
UPF1-209ENST00000600310 WDR17Q8IZU2 1322 aa26.28■■□□□ 1.8
UPF1-209ENST00000600310 ERBB3P21860 1342 aa26.27■■□□□ 1.8
UPF1-209ENST00000600310 INSRP06213 1382 aa26.26■■□□□ 1.79
UPF1-209ENST00000600310 PPM1GO15355 546 aaPredicted RBP26.26■■□□□ 1.79
UPF1-209ENST00000600310 ANKRD24Q8TF21 1146 aa26.26■■□□□ 1.79
UPF1-209ENST00000600310 SMG6Q86US8 1419 aaKnown RBP26.25■■□□□ 1.79
UPF1-209ENST00000600310 SPATA31A1Q5TZJ5 1347 aa26.25■■□□□ 1.79
UPF1-209ENST00000600310 CSB-PGBD3P0DP91 1061 aa26.25■■□□□ 1.79
UPF1-209ENST00000600310 HSP90AB2PQ58FF8 381 aa26.25■■□□□ 1.79
UPF1-209ENST00000600310 PEAK1Q9H792 1746 aa26.25■■□□□ 1.79
UPF1-209ENST00000600310 CRB1P82279 1406 aa26.24■■□□□ 1.79
UPF1-209ENST00000600310 TOM1L2Q6ZVM7 507 aa26.24■■□□□ 1.79
UPF1-209ENST00000600310 RGPD5Q99666 1765 aa26.23■■□□□ 1.79
UPF1-209ENST00000600310 GLI3P10071 1580 aa26.22■■□□□ 1.79
UPF1-209ENST00000600310 LTV1Q96GA3 475 aaPredicted RBP26.22■■□□□ 1.79
UPF1-209ENST00000600310 CARD10Q9BWT7 1032 aa26.22■■□□□ 1.79
UPF1-209ENST00000600310 MAP2P11137 1827 aaKnown RBP26.22■■□□□ 1.79
UPF1-209ENST00000600310 PARD3Q8TEW0 1356 aa26.2■■□□□ 1.79
UPF1-209ENST00000600310 MTHFSP49914 203 aa26.2■■□□□ 1.78
UPF1-209ENST00000600310 TCP11L2Q8N4U5 519 aa26.2■■□□□ 1.78
UPF1-209ENST00000600310 CDK12Q9NYV4 1490 aaPredicted RBP26.19■■□□□ 1.78
UPF1-209ENST00000600310 ONECUT3O60422 494 aaPredicted RBP26.19■■□□□ 1.78
UPF1-209ENST00000600310 USP35Q9P2H5 1018 aa26.19■■□□□ 1.78
UPF1-209ENST00000600310 THRAP3Q9Y2W1 955 aaKnown RBP26.19■■□□□ 1.78
UPF1-209ENST00000600310 BARGINQ6ZT62 677 aa26.18■■□□□ 1.78
UPF1-209ENST00000600310 NLRP2Q9NX02 1062 aa26.18■■□□□ 1.78
UPF1-209ENST00000600310 PPP2R1AP30153 589 aa26.17■■□□□ 1.78
UPF1-209ENST00000600310 RALBP1Q15311 655 aa26.17■■□□□ 1.78
UPF1-209ENST00000600310 FAM98CQ17RN3 349 aaKnown RBP26.16■■□□□ 1.78
UPF1-209ENST00000600310 RGS12O14924 1447 aa26.14■■□□□ 1.77
UPF1-209ENST00000600310 EIF4A2Q14240 407 aaKnown RBP26.13■■□□□ 1.77
UPF1-209ENST00000600310 NBPF6Q5VWK0 638 aa26.12■■□□□ 1.77
UPF1-209ENST00000600310 SEPT12Q8IYM1 358 aa26.12■■□□□ 1.77
UPF1-209ENST00000600310 UPF1Q92900 1129 aaKnown RBP eCLIP26.12■■□□□ 1.77
UPF1-209ENST00000600310 NBPF4Q96M43 638 aa26.12■■□□□ 1.77
UPF1-209ENST00000600310 FAM208AQ9UK61 1670 aaKnown RBP26.1■■□□□ 1.77
UPF1-209ENST00000600310 CDCA7Q9BWT1 371 aaPredicted RBP26.09■■□□□ 1.77
UPF1-209ENST00000600310 PRKRIP1Q9H875 184 aaPredicted RBP26.09■■□□□ 1.77
UPF1-209ENST00000600310 IL13P35225 146 aa26.08■■□□□ 1.77
UPF1-209ENST00000600310 EYA1Q99502 592 aa26.08■■□□□ 1.77
UPF1-209ENST00000600310 DISP2A7MBM2 1401 aa26.07■■□□□ 1.76
UPF1-209ENST00000600310 A0A0G2JS52 829 aa26.07■■□□□ 1.76
UPF1-209ENST00000600310 MYT1Q01538 1121 aa26.07■■□□□ 1.76
UPF1-209ENST00000600310 CFAP53Q96M91 514 aa26.06■■□□□ 1.76
UPF1-209ENST00000600310 THSD7AQ9UPZ6 1657 aa26.06■■□□□ 1.76
UPF1-209ENST00000600310 DIAPH1O60610 1272 aaKnown RBP26.05■■□□□ 1.76
UPF1-209ENST00000600310 IL2RBP14784 551 aa26.05■■□□□ 1.76
UPF1-209ENST00000600310 USHBP1Q8N6Y0 703 aa26.05■■□□□ 1.76
UPF1-209ENST00000600310 MYBBP1AQ9BQG0 1328 aaKnown RBP26.05■■□□□ 1.76
UPF1-209ENST00000600310 NCAPD2Q15021 1401 aa26.05■■□□□ 1.76
UPF1-209ENST00000600310 COL3A1P02461 1466 aaPredicted RBP26.04■■□□□ 1.76
UPF1-209ENST00000600310 IGSF1Q8N6C5 1336 aa26.03■■□□□ 1.76
UPF1-209ENST00000600310 RGPD2P0DJD1 1756 aa26.02■■□□□ 1.76
UPF1-209ENST00000600310 KRT27Q7Z3Y8 459 aa26■■□□□ 1.75
UPF1-209ENST00000600310 ANP32CO43423 234 aa25.99■■□□□ 1.75
UPF1-209ENST00000600310 DDB1Q16531 1140 aa25.99■■□□□ 1.75
UPF1-209ENST00000600310 RAPGEF4Q8WZA2 1011 aa25.99■■□□□ 1.75
UPF1-209ENST00000600310 PARP4Q9UKK3 1724 aaKnown RBP25.97■■□□□ 1.75
UPF1-209ENST00000600310 EXOC5O00471 708 aa25.97■■□□□ 1.75
UPF1-209ENST00000600310 PDE3BQ13370 1112 aa25.97■■□□□ 1.75
UPF1-209ENST00000600310 MEGF6O75095 1541 aa25.97■■□□□ 1.75
UPF1-209ENST00000600310 WNK3Q9BYP7 1800 aa25.97■■□□□ 1.75
UPF1-209ENST00000600310 TATP17735 454 aaPredicted RBP25.96■■□□□ 1.75
UPF1-209ENST00000600310 SULT6B1Q6IMI4 303 aa25.95■■□□□ 1.74
UPF1-209ENST00000600310 NUDCQ9Y266 331 aa25.95■■□□□ 1.74
UPF1-209ENST00000600310 RGPD1P0DJD0 1748 aa25.94■■□□□ 1.74
UPF1-209ENST00000600310 AEBP1Q8IUX7 1158 aa25.94■■□□□ 1.74
UPF1-209ENST00000600310 OVOS2A0A0G2JMS6 1433 aa25.94■■□□□ 1.74
UPF1-209ENST00000600310 TNS2Q63HR2 1409 aa25.94■■□□□ 1.74
UPF1-209ENST00000600310 KDRP35968 1356 aa25.94■■□□□ 1.74
UPF1-209ENST00000600310 LRRC37A3O60309 1634 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms