RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 COL5A2P05997 1499 aaPredicted RBP21.01■□□□□ 0.95
LIG1-219ENST00000600055 COL18A1P39060 1754 aa21.01■□□□□ 0.95
LIG1-219ENST00000600055 FAM98CQ17RN3 349 aaKnown RBP21■□□□□ 0.95
LIG1-219ENST00000600055 USP35Q9P2H5 1018 aa21■□□□□ 0.95
LIG1-219ENST00000600055 SPATA31A1Q5TZJ5 1347 aa21■□□□□ 0.95
LIG1-219ENST00000600055 SEPT12Q8IYM1 358 aa20.99■□□□□ 0.95
LIG1-219ENST00000600055 ONECUT3O60422 494 aaPredicted RBP20.98■□□□□ 0.95
LIG1-219ENST00000600055 WASHC2AQ641Q2 1341 aa20.98■□□□□ 0.95
LIG1-219ENST00000600055 CCDC7Q96M83 1385 aa20.97■□□□□ 0.95
LIG1-219ENST00000600055 CGNL1Q0VF96 1302 aa20.97■□□□□ 0.95
LIG1-219ENST00000600055 A0A0G2JS52 829 aa20.96■□□□□ 0.95
LIG1-219ENST00000600055 MYT1Q01538 1121 aa20.96■□□□□ 0.95
LIG1-219ENST00000600055 KIF20BQ96Q89 1820 aa20.95■□□□□ 0.94
LIG1-219ENST00000600055 RRS1Q15050 365 aaKnown RBP20.95■□□□□ 0.94
LIG1-219ENST00000600055 MAP3K19Q56UN5 1328 aa20.95■□□□□ 0.94
LIG1-219ENST00000600055 TOM1L2Q6ZVM7 507 aa20.94■□□□□ 0.94
LIG1-219ENST00000600055 CSB-PGBD3P0DP91 1061 aa20.93■□□□□ 0.94
LIG1-219ENST00000600055 TCP11L2Q8N4U5 519 aa20.93■□□□□ 0.94
LIG1-219ENST00000600055 WDR17Q8IZU2 1322 aa20.93■□□□□ 0.94
LIG1-219ENST00000600055 CRB1P82279 1406 aa20.93■□□□□ 0.94
LIG1-219ENST00000600055 LTN1O94822 1766 aa20.92■□□□□ 0.94
LIG1-219ENST00000600055 RGPD5Q99666 1765 aa20.92■□□□□ 0.94
LIG1-219ENST00000600055 IP6K1Q92551 441 aa20.92■□□□□ 0.94
LIG1-219ENST00000600055 ABCC6O95255 1503 aa20.92■□□□□ 0.94
LIG1-219ENST00000600055 AMPHP49418 695 aa20.91■□□□□ 0.94
LIG1-219ENST00000600055 ERBB3P21860 1342 aa20.9■□□□□ 0.94
LIG1-219ENST00000600055 HOXC9P31274 260 aa20.9■□□□□ 0.94
LIG1-219ENST00000600055 BARGINQ6ZT62 677 aa20.9■□□□□ 0.94
LIG1-219ENST00000600055 ANKRD24Q8TF21 1146 aa20.9■□□□□ 0.94
LIG1-219ENST00000600055 UPF1Q92900 1129 aaKnown RBP eCLIP20.9■□□□□ 0.94
LIG1-219ENST00000600055 KNSTRNQ9Y448 316 aa20.9■□□□□ 0.94
LIG1-219ENST00000600055 LTV1Q96GA3 475 aaPredicted RBP20.89■□□□□ 0.93
LIG1-219ENST00000600055 TNNT2P45379 298 aaPredicted RBP20.88■□□□□ 0.93
LIG1-219ENST00000600055 KRT27Q7Z3Y8 459 aa20.88■□□□□ 0.93
LIG1-219ENST00000600055 THRAP3Q9Y2W1 955 aaKnown RBP20.88■□□□□ 0.93
LIG1-219ENST00000600055 THSD7AQ9UPZ6 1657 aa20.88■□□□□ 0.93
LIG1-219ENST00000600055 BRWD3Q6RI45 1802 aa20.88■□□□□ 0.93
LIG1-219ENST00000600055 CARD10Q9BWT7 1032 aa20.87■□□□□ 0.93
LIG1-219ENST00000600055 EMILIN1Q9Y6C2 1016 aa20.87■□□□□ 0.93
LIG1-219ENST00000600055 BLMP54132 1417 aaPredicted RBP20.87■□□□□ 0.93
LIG1-219ENST00000600055 PER1O15534 1290 aaPredicted RBP20.86■□□□□ 0.93
LIG1-219ENST00000600055 NLRP2Q9NX02 1062 aa20.86■□□□□ 0.93
LIG1-219ENST00000600055 AMER1Q5JTC6 1135 aaPredicted RBP20.85■□□□□ 0.93
LIG1-219ENST00000600055 FAM182BQ5T319 152 aa20.85■□□□□ 0.93
LIG1-219ENST00000600055 RTL1A6NKG5 1358 aa20.85■□□□□ 0.93
LIG1-219ENST00000600055 ZEB1P37275 1124 aaPredicted RBP20.84■□□□□ 0.93
LIG1-219ENST00000600055 HSP90AB2PQ58FF8 381 aa20.84■□□□□ 0.93
LIG1-219ENST00000600055 NSD2O96028 1365 aa20.84■□□□□ 0.93
LIG1-219ENST00000600055 PPM1GO15355 546 aaPredicted RBP20.83■□□□□ 0.93
LIG1-219ENST00000600055 MORC1Q86VD1 984 aa20.83■□□□□ 0.93
LIG1-219ENST00000600055 PEAK1Q9H792 1746 aa20.83■□□□□ 0.92
LIG1-219ENST00000600055 POLKQ9UBT6 870 aa20.82■□□□□ 0.92
LIG1-219ENST00000600055 ANKRD26Q9UPS8 1709 aa20.81■□□□□ 0.92
LIG1-219ENST00000600055 FLT4P35916 1363 aa20.81■□□□□ 0.92
LIG1-219ENST00000600055 CC2D1BQ5T0F9 858 aaKnown RBP20.8■□□□□ 0.92
LIG1-219ENST00000600055 DISP2A7MBM2 1401 aa20.79■□□□□ 0.92
LIG1-219ENST00000600055 PDE3BQ13370 1112 aa20.79■□□□□ 0.92
LIG1-219ENST00000600055 CNGB1Q14028 1251 aaPredicted RBP20.79■□□□□ 0.92
LIG1-219ENST00000600055 INSRP06213 1382 aa20.79■□□□□ 0.92
LIG1-219ENST00000600055 KIF24Q5T7B8 1368 aa20.79■□□□□ 0.92
LIG1-219ENST00000600055 DDB1Q16531 1140 aa20.77■□□□□ 0.92
LIG1-219ENST00000600055 NBPF6Q5VWK0 638 aa20.77■□□□□ 0.92
LIG1-219ENST00000600055 NBPF4Q96M43 638 aa20.77■□□□□ 0.92
LIG1-219ENST00000600055 CDCA7Q9BWT1 371 aaPredicted RBP20.77■□□□□ 0.92
LIG1-219ENST00000600055 PARP4Q9UKK3 1724 aaKnown RBP20.76■□□□□ 0.91
LIG1-219ENST00000600055 USHBP1Q8N6Y0 703 aa20.76■□□□□ 0.91
LIG1-219ENST00000600055 IL2RBP14784 551 aa20.75■□□□□ 0.91
LIG1-219ENST00000600055 EP400Q96L91 3159 aa20.75■□□□□ 0.91
LIG1-219ENST00000600055 LRRC37A3O60309 1634 aa20.75■□□□□ 0.91
LIG1-219ENST00000600055 MAP2P11137 1827 aaKnown RBP20.74■□□□□ 0.91
LIG1-219ENST00000600055 WNK3Q9BYP7 1800 aa20.74■□□□□ 0.91
LIG1-219ENST00000600055 SMG6Q86US8 1419 aaKnown RBP20.74■□□□□ 0.91
LIG1-219ENST00000600055 RGPD2P0DJD1 1756 aa20.72■□□□□ 0.91
LIG1-219ENST00000600055 EXOC5O00471 708 aa20.72■□□□□ 0.91
LIG1-219ENST00000600055 FAM196AQ6ZSG2 479 aa20.72■□□□□ 0.91
LIG1-219ENST00000600055 MARCH10Q8NA82 808 aaPredicted RBP20.72■□□□□ 0.91
LIG1-219ENST00000600055 NPC1L1Q9UHC9 1359 aa20.72■□□□□ 0.91
LIG1-219ENST00000600055 FAM208AQ9UK61 1670 aaKnown RBP20.71■□□□□ 0.91
LIG1-219ENST00000600055 EIF4A2Q14240 407 aaKnown RBP20.7■□□□□ 0.9
LIG1-219ENST00000600055 CCDC125Q86Z20 511 aa20.7■□□□□ 0.9
LIG1-219ENST00000600055 TNS2Q63HR2 1409 aa20.69■□□□□ 0.9
LIG1-219ENST00000600055 TRIM37O94972 964 aa20.68■□□□□ 0.9
LIG1-219ENST00000600055 EYA1Q99502 592 aa20.68■□□□□ 0.9
LIG1-219ENST00000600055 MEGF6O75095 1541 aa20.68■□□□□ 0.9
LIG1-219ENST00000600055 MTHFSP49914 203 aa20.67■□□□□ 0.9
LIG1-219ENST00000600055 DEFB132Q7Z7B7 95 aa20.67■□□□□ 0.9
LIG1-219ENST00000600055 DDX10Q13206 875 aaKnown RBP20.66■□□□□ 0.9
LIG1-219ENST00000600055 SF3B2Q13435 895 aaKnown RBP20.66■□□□□ 0.9
LIG1-219ENST00000600055 OVOS2A0A0G2JMS6 1433 aa20.66■□□□□ 0.9
LIG1-219ENST00000600055 DDX54Q8TDD1 881 aaKnown RBP20.64■□□□□ 0.89
LIG1-219ENST00000600055 RAPGEF4Q8WZA2 1011 aa20.64■□□□□ 0.89
LIG1-219ENST00000600055 TATP17735 454 aaPredicted RBP20.63■□□□□ 0.89
LIG1-219ENST00000600055 ZCRB1Q8TBF4 217 aaKnown RBP20.63■□□□□ 0.89
LIG1-219ENST00000600055 NCAPD2Q15021 1401 aa20.62■□□□□ 0.89
LIG1-219ENST00000600055 PTF1AQ7RTS3 328 aa20.62■□□□□ 0.89
LIG1-219ENST00000600055 IL13P35225 146 aa20.61■□□□□ 0.89
LIG1-219ENST00000600055 IGSF1Q8N6C5 1336 aa20.6■□□□□ 0.89
LIG1-219ENST00000600055 BAG6P46379 1132 aa20.6■□□□□ 0.89
LIG1-219ENST00000600055 EN1Q05925 392 aaPredicted RBP20.6■□□□□ 0.89
LIG1-219ENST00000600055 APBA3O96018 575 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms