RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 NSD3Q9BZ95 1437 aa24.43■■□□□ 1.5
USHBP1-209ENST00000598570 KIF20BQ96Q89 1820 aa24.42■■□□□ 1.5
USHBP1-209ENST00000598570 EVA1CP58658 441 aa24.42■■□□□ 1.5
USHBP1-209ENST00000598570 CRB1P82279 1406 aa24.42■■□□□ 1.5
USHBP1-209ENST00000598570 BRWD3Q6RI45 1802 aa24.42■■□□□ 1.5
USHBP1-209ENST00000598570 LTN1O94822 1766 aa24.42■■□□□ 1.5
USHBP1-209ENST00000598570 WDR17Q8IZU2 1322 aa24.41■■□□□ 1.5
USHBP1-209ENST00000598570 PANK3Q9H999 370 aa24.41■■□□□ 1.5
USHBP1-209ENST00000598570 UPF1Q92900 1129 aaKnown RBP eCLIP24.4■■□□□ 1.5
USHBP1-209ENST00000598570 STRN4Q9NRL3 753 aa24.4■■□□□ 1.5
USHBP1-209ENST00000598570 IP6K1Q92551 441 aa24.39■■□□□ 1.49
USHBP1-209ENST00000598570 GGNBP2Q9H3C7 697 aa24.39■■□□□ 1.49
USHBP1-209ENST00000598570 EP400Q96L91 3159 aa24.39■■□□□ 1.49
USHBP1-209ENST00000598570 CGNL1Q0VF96 1302 aa24.38■■□□□ 1.49
USHBP1-209ENST00000598570 FAM98CQ17RN3 349 aaKnown RBP24.38■■□□□ 1.49
USHBP1-209ENST00000598570 TCP11L2Q8N4U5 519 aa24.38■■□□□ 1.49
USHBP1-209ENST00000598570 CCDC9Q9Y3X0 531 aaKnown RBP24.38■■□□□ 1.49
USHBP1-209ENST00000598570 BLMP54132 1417 aaPredicted RBP24.37■■□□□ 1.49
USHBP1-209ENST00000598570 CARD10Q9BWT7 1032 aa24.37■■□□□ 1.49
USHBP1-209ENST00000598570 KIF24Q5T7B8 1368 aa24.37■■□□□ 1.49
USHBP1-209ENST00000598570 MAP3K19Q56UN5 1328 aa24.36■■□□□ 1.49
USHBP1-209ENST00000598570 CCDC7Q96M83 1385 aa24.36■■□□□ 1.49
USHBP1-209ENST00000598570 ERBB3P21860 1342 aa24.35■■□□□ 1.49
USHBP1-209ENST00000598570 SOX12O15370 315 aa24.35■■□□□ 1.49
USHBP1-209ENST00000598570 PER1O15534 1290 aaPredicted RBP24.35■■□□□ 1.49
USHBP1-209ENST00000598570 WASHC2AQ641Q2 1341 aa24.35■■□□□ 1.49
USHBP1-209ENST00000598570 RTL1A6NKG5 1358 aa24.33■■□□□ 1.49
USHBP1-209ENST00000598570 FBLN1P23142 703 aa24.33■■□□□ 1.49
USHBP1-209ENST00000598570 ANKRD26Q9UPS8 1709 aa24.32■■□□□ 1.48
USHBP1-209ENST00000598570 NSD2O96028 1365 aa24.32■■□□□ 1.48
USHBP1-209ENST00000598570 KRT27Q7Z3Y8 459 aa24.32■■□□□ 1.48
USHBP1-209ENST00000598570 PARP4Q9UKK3 1724 aaKnown RBP24.32■■□□□ 1.48
USHBP1-209ENST00000598570 HOXC9P31274 260 aa24.31■■□□□ 1.48
USHBP1-209ENST00000598570 DISP2A7MBM2 1401 aa24.3■■□□□ 1.48
USHBP1-209ENST00000598570 CCDC125Q86Z20 511 aa24.3■■□□□ 1.48
USHBP1-209ENST00000598570 POLR3GLQ9BT43 218 aa24.3■■□□□ 1.48
USHBP1-209ENST00000598570 ZBTB7CA1YPR0 619 aa24.29■■□□□ 1.48
USHBP1-209ENST00000598570 AMER1Q5JTC6 1135 aaPredicted RBP24.29■■□□□ 1.48
USHBP1-209ENST00000598570 TOM1L2Q6ZVM7 507 aa24.29■■□□□ 1.48
USHBP1-209ENST00000598570 CDCA7Q9BWT1 371 aaPredicted RBP24.29■■□□□ 1.48
USHBP1-209ENST00000598570 ANKRD24Q8TF21 1146 aa24.28■■□□□ 1.48
USHBP1-209ENST00000598570 WNK3Q9BYP7 1800 aa24.27■■□□□ 1.48
USHBP1-209ENST00000598570 FAM208AQ9UK61 1670 aaKnown RBP24.27■■□□□ 1.48
USHBP1-209ENST00000598570 PEAK1Q9H792 1746 aa24.27■■□□□ 1.48
USHBP1-209ENST00000598570 USP35Q9P2H5 1018 aa24.26■■□□□ 1.47
USHBP1-209ENST00000598570 INSRP06213 1382 aa24.26■■□□□ 1.47
USHBP1-209ENST00000598570 NPC1L1Q9UHC9 1359 aa24.26■■□□□ 1.47
USHBP1-209ENST00000598570 RRS1Q15050 365 aaKnown RBP24.25■■□□□ 1.47
USHBP1-209ENST00000598570 MAP2P11137 1827 aaKnown RBP24.25■■□□□ 1.47
USHBP1-209ENST00000598570 AMPHP49418 695 aa24.24■■□□□ 1.47
USHBP1-209ENST00000598570 POLKQ9UBT6 870 aa24.24■■□□□ 1.47
USHBP1-209ENST00000598570 KNSTRNQ9Y448 316 aa24.24■■□□□ 1.47
USHBP1-209ENST00000598570 FLT4P35916 1363 aa24.23■■□□□ 1.47
USHBP1-209ENST00000598570 BCL9O00512 1426 aa24.22■■□□□ 1.47
USHBP1-209ENST00000598570 SMG6Q86US8 1419 aaKnown RBP24.21■■□□□ 1.47
USHBP1-209ENST00000598570 CSB-PGBD3P0DP91 1061 aa24.21■■□□□ 1.47
USHBP1-209ENST00000598570 HSP90AB2PQ58FF8 381 aa24.2■■□□□ 1.46
USHBP1-209ENST00000598570 LRRC37A3O60309 1634 aa24.2■■□□□ 1.46
USHBP1-209ENST00000598570 EMILIN1Q9Y6C2 1016 aa24.19■■□□□ 1.46
USHBP1-209ENST00000598570 NCAPD2Q15021 1401 aa24.18■■□□□ 1.46
USHBP1-209ENST00000598570 FAM196AQ6ZSG2 479 aa24.18■■□□□ 1.46
USHBP1-209ENST00000598570 NLRP2Q9NX02 1062 aa24.18■■□□□ 1.46
USHBP1-209ENST00000598570 ZEB1P37275 1124 aaPredicted RBP24.16■■□□□ 1.46
USHBP1-209ENST00000598570 PDE3BQ13370 1112 aa24.16■■□□□ 1.46
USHBP1-209ENST00000598570 RGPD2P0DJD1 1756 aa24.16■■□□□ 1.46
USHBP1-209ENST00000598570 A0A0G2JS52 829 aa24.15■■□□□ 1.46
USHBP1-209ENST00000598570 MYT1Q01538 1121 aa24.15■■□□□ 1.46
USHBP1-209ENST00000598570 DDB1Q16531 1140 aa24.15■■□□□ 1.46
USHBP1-209ENST00000598570 NBPF6Q5VWK0 638 aa24.15■■□□□ 1.46
USHBP1-209ENST00000598570 NBPF4Q96M43 638 aa24.15■■□□□ 1.46
USHBP1-209ENST00000598570 IL2RBP14784 551 aa24.14■■□□□ 1.45
USHBP1-209ENST00000598570 MORC1Q86VD1 984 aa24.13■■□□□ 1.45
USHBP1-209ENST00000598570 MARCH10Q8NA82 808 aaPredicted RBP24.13■■□□□ 1.45
USHBP1-209ENST00000598570 EXOC5O00471 708 aa24.12■■□□□ 1.45
USHBP1-209ENST00000598570 FAM182BQ5T319 152 aa24.12■■□□□ 1.45
USHBP1-209ENST00000598570 TNS2Q63HR2 1409 aa24.11■■□□□ 1.45
USHBP1-209ENST00000598570 LTV1Q96GA3 475 aaPredicted RBP24.11■■□□□ 1.45
USHBP1-209ENST00000598570 SBF2Q86WG5 1849 aa24.1■■□□□ 1.45
USHBP1-209ENST00000598570 RGPD1P0DJD0 1748 aa24.1■■□□□ 1.45
USHBP1-209ENST00000598570 OVOS2A0A0G2JMS6 1433 aa24.09■■□□□ 1.45
USHBP1-209ENST00000598570 TNS1Q9HBL0 1735 aaKnown RBP24.08■■□□□ 1.45
USHBP1-209ENST00000598570 PLEKHG2Q9H7P9 1386 aa24.07■■□□□ 1.44
USHBP1-209ENST00000598570 TNNT2P45379 298 aaPredicted RBP24.06■■□□□ 1.44
USHBP1-209ENST00000598570 EIF4A2Q14240 407 aaKnown RBP24.05■■□□□ 1.44
USHBP1-209ENST00000598570 EYA1Q99502 592 aa24.05■■□□□ 1.44
USHBP1-209ENST00000598570 MEGF6O75095 1541 aa24.05■■□□□ 1.44
USHBP1-209ENST00000598570 PPM1GO15355 546 aaPredicted RBP24.03■■□□□ 1.44
USHBP1-209ENST00000598570 SHANK3Q9BYB0 1731 aa24.03■■□□□ 1.44
USHBP1-209ENST00000598570 TRIM37O94972 964 aa24.01■■□□□ 1.43
USHBP1-209ENST00000598570 BCL11BQ9C0K0 894 aaPredicted RBP24.01■■□□□ 1.43
USHBP1-209ENST00000598570 IGSF1Q8N6C5 1336 aa24.01■■□□□ 1.43
USHBP1-209ENST00000598570 ZCRB1Q8TBF4 217 aaKnown RBP24■■□□□ 1.43
USHBP1-209ENST00000598570 CAMKK2Q96RR4 588 aa24■■□□□ 1.43
USHBP1-209ENST00000598570 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24■■□□□ 1.43
USHBP1-209ENST00000598570 IL13P35225 146 aa23.99■■□□□ 1.43
USHBP1-209ENST00000598570 MTHFSP49914 203 aa23.99■■□□□ 1.43
USHBP1-209ENST00000598570 SF3B2Q13435 895 aaKnown RBP23.99■■□□□ 1.43
USHBP1-209ENST00000598570 CC2D1BQ5T0F9 858 aaKnown RBP23.99■■□□□ 1.43
USHBP1-209ENST00000598570 DEFB132Q7Z7B7 95 aa23.99■■□□□ 1.43
USHBP1-209ENST00000598570 USHBP1Q8N6Y0 703 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms