RNA–Protein interactions for RNA: ENST00000591515.6

LSM7-206, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM7, Length 710 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM7-206	ENST00000591515	COL18A1	P39060	1754 aa		32.74	■■■□□ 2.83
LSM7-206	ENST00000591515	NLRP13	Q86W25	1043 aa		32.73	■■■□□ 2.83
LSM7-206	ENST00000591515	PDGFD	Q9GZP0	370 aa	Predicted RBP	32.73	■■■□□ 2.83
LSM7-206	ENST00000591515	PTF1A	Q7RTS3	328 aa		32.72	■■■□□ 2.83
LSM7-206	ENST00000591515	SLIT3	O75094	1523 aa		32.71	■■■□□ 2.83
LSM7-206	ENST00000591515	PPIP5K1	Q6PFW1	1433 aa		32.7	■■■□□ 2.83
LSM7-206	ENST00000591515	CARD11	Q9BXL7	1154 aa		32.68	■■■□□ 2.82
LSM7-206	ENST00000591515	CHD4	Q14839	1912 aa		32.68	■■■□□ 2.82
LSM7-206	ENST00000591515	RGPD5	Q99666	1765 aa		32.68	■■■□□ 2.82
LSM7-206	ENST00000591515	DDB1	Q16531	1140 aa		32.67	■■■□□ 2.82
LSM7-206	ENST00000591515	ZBTB7C	A1YPR0	619 aa		32.66	■■■□□ 2.82
LSM7-206	ENST00000591515	PROM2	Q8N271	834 aa		32.66	■■■□□ 2.82
LSM7-206	ENST00000591515	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.66	■■■□□ 2.82
LSM7-206	ENST00000591515	AATK	Q6ZMQ8	1374 aa		32.66	■■■□□ 2.82
LSM7-206	ENST00000591515	ZBTB7A	O95365	584 aa		32.65	■■■□□ 2.82
LSM7-206	ENST00000591515	PIK3C2A	O00443	1686 aa		32.65	■■■□□ 2.82
LSM7-206	ENST00000591515	PTGER2	P43116	358 aa		32.64	■■■□□ 2.82
LSM7-206	ENST00000591515	BRD4	O60885	1362 aa	Predicted RBP	32.63	■■■□□ 2.81
LSM7-206	ENST00000591515	ZNF784	Q8NCA9	323 aa	Predicted RBP	32.62	■■■□□ 2.81
LSM7-206	ENST00000591515	QRICH2	Q9H0J4	1663 aa		32.62	■■■□□ 2.81
LSM7-206	ENST00000591515	BCL9	O00512	1426 aa		32.61	■■■□□ 2.81
LSM7-206	ENST00000591515	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.61	■■■□□ 2.81
LSM7-206	ENST00000591515	MARCH10	Q8NA82	808 aa	Predicted RBP	32.61	■■■□□ 2.81
LSM7-206	ENST00000591515	USP6	P35125	1406 aa		32.6	■■■□□ 2.81
LSM7-206	ENST00000591515	SRPK2	P78362	688 aa	Known RBP	32.6	■■■□□ 2.81
LSM7-206	ENST00000591515	TOM1L2	Q6ZVM7	507 aa		32.6	■■■□□ 2.81
LSM7-206	ENST00000591515	CABP2	Q9NPB3	220 aa		32.58	■■■□□ 2.81
LSM7-206	ENST00000591515	ATF5	Q9Y2D1	282 aa	Predicted RBP	32.58	■■■□□ 2.81
LSM7-206	ENST00000591515	NLRP6	P59044	892 aa		32.57	■■■□□ 2.8
LSM7-206	ENST00000591515	WDR17	Q8IZU2	1322 aa		32.56	■■■□□ 2.8
LSM7-206	ENST00000591515	AXIN2	Q9Y2T1	843 aa		32.55	■■■□□ 2.8
LSM7-206	ENST00000591515	CPSF1	Q10570	1443 aa	Known RBP	32.53	■■■□□ 2.8
LSM7-206	ENST00000591515	TXNRD1	Q16881	649 aa		32.53	■■■□□ 2.8
LSM7-206	ENST00000591515	FHDC1	Q9C0D6	1143 aa	Predicted RBP	32.52	■■■□□ 2.8
LSM7-206	ENST00000591515	STK32B	Q9NY57	414 aa		32.52	■■■□□ 2.8
LSM7-206	ENST00000591515	NHS	Q6T4R5	1651 aa		32.51	■■■□□ 2.79
LSM7-206	ENST00000591515	SYT17	Q9BSW7	474 aa		32.51	■■■□□ 2.79
LSM7-206	ENST00000591515	SLC15A2	Q16348	729 aa		32.5	■■■□□ 2.79
LSM7-206	ENST00000591515	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.5	■■■□□ 2.79
LSM7-206	ENST00000591515	CABP1	Q9NZU7	370 aa		32.49	■■■□□ 2.79
LSM7-206	ENST00000591515	SLC24A1	O60721	1099 aa		32.48	■■■□□ 2.79
LSM7-206	ENST00000591515	SGIP1	Q9BQI5	828 aa		32.48	■■■□□ 2.79
LSM7-206	ENST00000591515	PAPPA	Q13219	1627 aa		32.48	■■■□□ 2.79
LSM7-206	ENST00000591515	MTFR1L	Q9H019	292 aa		32.46	■■■□□ 2.79
LSM7-206	ENST00000591515	ARHGEF25	Q86VW2	580 aa		32.44	■■■□□ 2.78
LSM7-206	ENST00000591515	CARD10	Q9BWT7	1032 aa		32.44	■■■□□ 2.78
LSM7-206	ENST00000591515	SBNO2	Q9Y2G9	1366 aa		32.43	■■■□□ 2.78
LSM7-206	ENST00000591515	TNS2	Q63HR2	1409 aa		32.43	■■■□□ 2.78
LSM7-206	ENST00000591515	SENP3-EIF4A1	A0A087X0R7	540 aa		32.42	■■■□□ 2.78
LSM7-206	ENST00000591515	EVC2	Q86UK5	1308 aa		32.42	■■■□□ 2.78
LSM7-206	ENST00000591515	USP47	Q96K76	1375 aa		32.42	■■■□□ 2.78
LSM7-206	ENST00000591515	BTAF1	O14981	1849 aa		32.42	■■■□□ 2.78
LSM7-206	ENST00000591515	NFAT5	O94916	1531 aa		32.41	■■■□□ 2.78
LSM7-206	ENST00000591515	KAT6B	Q8WYB5	2073 aa		32.4	■■■□□ 2.78
LSM7-206	ENST00000591515	CSB-PGBD3	P0DP91	1061 aa		32.39	■■■□□ 2.78
LSM7-206	ENST00000591515	ABCC6	O95255	1503 aa		32.38	■■■□□ 2.77
LSM7-206	ENST00000591515	EXOC5	O00471	708 aa		32.38	■■■□□ 2.77
LSM7-206	ENST00000591515	C1QTNF8	P60827	252 aa		32.37	■■■□□ 2.77
LSM7-206	ENST00000591515	CCDC7	Q96M83	1385 aa		32.36	■■■□□ 2.77
LSM7-206	ENST00000591515	MAP3K5	Q99683	1374 aa		32.36	■■■□□ 2.77
LSM7-206	ENST00000591515	SOX12	O15370	315 aa		32.36	■■■□□ 2.77
LSM7-206	ENST00000591515	TTC21B	Q7Z4L5	1316 aa		32.35	■■■□□ 2.77
LSM7-206	ENST00000591515	KCNH5	Q8NCM2	988 aa		32.35	■■■□□ 2.77
LSM7-206	ENST00000591515	ARX	Q96QS3	562 aa		32.35	■■■□□ 2.77
LSM7-206	ENST00000591515	ST20-MTHFS	A0A0A6YYL1	179 aa		32.34	■■■□□ 2.77
LSM7-206	ENST00000591515	QSER1	Q2KHR3	1735 aa		32.32	■■■□□ 2.76
LSM7-206	ENST00000591515	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.31	■■■□□ 2.76
LSM7-206	ENST00000591515	ACSBG1	Q96GR2	724 aa		32.31	■■■□□ 2.76
LSM7-206	ENST00000591515	COL24A1	Q17RW2	1714 aa		32.31	■■■□□ 2.76
LSM7-206	ENST00000591515	MON2	Q7Z3U7	1717 aa		32.3	■■■□□ 2.76
LSM7-206	ENST00000591515	LTN1	O94822	1766 aa		32.3	■■■□□ 2.76
LSM7-206	ENST00000591515	TUBGCP6	Q96RT7	1819 aa		32.28	■■■□□ 2.76
LSM7-206	ENST00000591515	USP54	Q70EL1	1684 aa		32.27	■■■□□ 2.76
LSM7-206	ENST00000591515	TTC21A	Q8NDW8	1320 aa		32.27	■■■□□ 2.76
LSM7-206	ENST00000591515	ZNF827	Q17R98	1081 aa		32.27	■■■□□ 2.76
LSM7-206	ENST00000591515	ZNF692	Q9BU19	519 aa	Predicted RBP	32.26	■■■□□ 2.75
LSM7-206	ENST00000591515	ZEB1	P37275	1124 aa	Predicted RBP	32.25	■■■□□ 2.75
LSM7-206	ENST00000591515	TMF1	P82094	1093 aa		32.25	■■■□□ 2.75
LSM7-206	ENST00000591515	GOLGB1	Q14789	3259 aa	Known RBP	32.24	■■■□□ 2.75
LSM7-206	ENST00000591515	PUS7	Q96PZ0	661 aa	Known RBP	32.24	■■■□□ 2.75
LSM7-206	ENST00000591515	CDCA8	Q53HL2	280 aa		32.23	■■■□□ 2.75
LSM7-206	ENST00000591515	TESK2	Q96S53	571 aa		32.23	■■■□□ 2.75
LSM7-206	ENST00000591515	GPR162	Q16538	588 aa		32.21	■■■□□ 2.75
LSM7-206	ENST00000591515	LRRC4B	Q9NT99	713 aa		32.21	■■■□□ 2.75
LSM7-206	ENST00000591515	ERBB3	P21860	1342 aa		32.21	■■■□□ 2.75
LSM7-206	ENST00000591515	SHANK3	Q9BYB0	1731 aa		32.2	■■■□□ 2.75
LSM7-206	ENST00000591515	KTN1	Q86UP2	1357 aa	Known RBP	32.19	■■■□□ 2.74
LSM7-206	ENST00000591515	NLRP2	Q9NX02	1062 aa		32.17	■■■□□ 2.74
LSM7-206	ENST00000591515	HSPA5	P11021	654 aa	Known RBP	32.16	■■■□□ 2.74
LSM7-206	ENST00000591515	IL2RB	P14784	551 aa		32.16	■■■□□ 2.74
LSM7-206	ENST00000591515	GIGYF1	O75420	1035 aa	Predicted RBP	32.15	■■■□□ 2.74
LSM7-206	ENST00000591515	AKT1S1	Q96B36	256 aa		32.15	■■■□□ 2.74
LSM7-206	ENST00000591515	USP31	Q70CQ4	1352 aa		32.13	■■■□□ 2.73
LSM7-206	ENST00000591515	KLHL34	Q8N239	644 aa		32.13	■■■□□ 2.73
LSM7-206	ENST00000591515	SLC16A10	Q8TF71	515 aa		32.11	■■■□□ 2.73
LSM7-206	ENST00000591515	LY75	O60449	1722 aa		32.11	■■■□□ 2.73
LSM7-206	ENST00000591515	PNPLA7	Q6ZV29	1317 aa		32.1	■■■□□ 2.73
LSM7-206	ENST00000591515	DOT1L	Q8TEK3	1739 aa		32.1	■■■□□ 2.73
LSM7-206	ENST00000591515	IFFO2	Q5TF58	517 aa		32.1	■■■□□ 2.73
LSM7-206	ENST00000591515	PELP1	Q8IZL8	1130 aa	Known RBP	32.09	■■■□□ 2.73

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms