RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CABP2Q9NPB3 220 aa14.83□□□□□ -0.04
LIG3-212ENST00000590181 PPP1R1BQ9UD71 204 aaPredicted RBP14.83□□□□□ -0.04
LIG3-212ENST00000590181 TCP11L2Q8N4U5 519 aa14.82□□□□□ -0.04
LIG3-212ENST00000590181 CABP1Q9NZU7 370 aa14.82□□□□□ -0.04
LIG3-212ENST00000590181 CRB1P82279 1406 aa14.82□□□□□ -0.04
LIG3-212ENST00000590181 COL18A1P39060 1754 aa14.81□□□□□ -0.04
LIG3-212ENST00000590181 RGPD5Q99666 1765 aa14.81□□□□□ -0.04
LIG3-212ENST00000590181 SPON1Q9HCB6 807 aa14.8□□□□□ -0.04
LIG3-212ENST00000590181 TTC21AQ8NDW8 1320 aa14.8□□□□□ -0.04
LIG3-212ENST00000590181 THRAP3Q9Y2W1 955 aaKnown RBP14.79□□□□□ -0.04
LIG3-212ENST00000590181 USP6P35125 1406 aa14.78□□□□□ -0.04
LIG3-212ENST00000590181 KCNQ2O43526 872 aa14.78□□□□□ -0.04
LIG3-212ENST00000590181 CDCA8Q53HL2 280 aa14.77□□□□□ -0.05
LIG3-212ENST00000590181 KCNH5Q8NCM2 988 aa14.77□□□□□ -0.05
LIG3-212ENST00000590181 NHSQ6T4R5 1651 aa14.77□□□□□ -0.05
LIG3-212ENST00000590181 ZBTB7CA1YPR0 619 aa14.76□□□□□ -0.05
LIG3-212ENST00000590181 DCAF8L1A6NGE4 600 aa14.76□□□□□ -0.05
LIG3-212ENST00000590181 GCP02774 474 aa14.76□□□□□ -0.05
LIG3-212ENST00000590181 TERF2IPQ9NYB0 399 aa14.76□□□□□ -0.05
LIG3-212ENST00000590181 CHD4Q14839 1912 aa14.76□□□□□ -0.05
LIG3-212ENST00000590181 CPSF1Q10570 1443 aaKnown RBP14.75□□□□□ -0.05
LIG3-212ENST00000590181 C11orf95C9JLR9 678 aaPredicted RBP14.75□□□□□ -0.05
LIG3-212ENST00000590181 HDGFL2Q7Z4V5 671 aaPredicted RBP14.75□□□□□ -0.05
LIG3-212ENST00000590181 ANO8Q9HCE9 1232 aaPredicted RBP14.75□□□□□ -0.05
LIG3-212ENST00000590181 NLRP6P59044 892 aa14.74□□□□□ -0.05
LIG3-212ENST00000590181 AATKQ6ZMQ8 1374 aa14.73□□□□□ -0.05
LIG3-212ENST00000590181 KTN1Q86UP2 1357 aaKnown RBP14.73□□□□□ -0.05
LIG3-212ENST00000590181 TTC21BQ7Z4L5 1316 aa14.72□□□□□ -0.05
LIG3-212ENST00000590181 DDB1Q16531 1140 aa14.72□□□□□ -0.05
LIG3-212ENST00000590181 PCGF6Q9BYE7 350 aa14.72□□□□□ -0.05
LIG3-212ENST00000590181 PAPPAQ13219 1627 aa14.72□□□□□ -0.05
LIG3-212ENST00000590181 ST20-MTHFSA0A0A6YYL1 179 aa14.71□□□□□ -0.05
LIG3-212ENST00000590181 TMF1P82094 1093 aa14.71□□□□□ -0.05
LIG3-212ENST00000590181 TESK2Q96S53 571 aa14.71□□□□□ -0.05
LIG3-212ENST00000590181 MON2Q7Z3U7 1717 aa14.71□□□□□ -0.05
LIG3-212ENST00000590181 NFAT5O94916 1531 aa14.71□□□□□ -0.06
LIG3-212ENST00000590181 ABCC6O95255 1503 aa14.71□□□□□ -0.06
LIG3-212ENST00000590181 LTN1O94822 1766 aa14.7□□□□□ -0.06
LIG3-212ENST00000590181 UTRNP46939 3433 aa14.7□□□□□ -0.06
LIG3-212ENST00000590181 TNS2Q63HR2 1409 aa14.7□□□□□ -0.06
LIG3-212ENST00000590181 BTAF1O14981 1849 aa14.7□□□□□ -0.06
LIG3-212ENST00000590181 USP54Q70EL1 1684 aa14.7□□□□□ -0.06
LIG3-212ENST00000590181 BCL9O00512 1426 aa14.69□□□□□ -0.06
LIG3-212ENST00000590181 PLSCR1O15162 318 aa14.69□□□□□ -0.06
LIG3-212ENST00000590181 TOM1L2Q6ZVM7 507 aa14.69□□□□□ -0.06
LIG3-212ENST00000590181 BCL11BQ9C0K0 894 aaPredicted RBP14.69□□□□□ -0.06
LIG3-212ENST00000590181 USP31Q70CQ4 1352 aa14.69□□□□□ -0.06
LIG3-212ENST00000590181 WDR17Q8IZU2 1322 aa14.68□□□□□ -0.06
LIG3-212ENST00000590181 EDC4Q6P2E9 1401 aaKnown RBP14.68□□□□□ -0.06
LIG3-212ENST00000590181 ZBTB7AO95365 584 aa14.68□□□□□ -0.06
LIG3-212ENST00000590181 PTF1AQ7RTS3 328 aa14.68□□□□□ -0.06
LIG3-212ENST00000590181 TMC1Q8TDI8 760 aa14.68□□□□□ -0.06
LIG3-212ENST00000590181 QSER1Q2KHR3 1735 aa14.67□□□□□ -0.06
LIG3-212ENST00000590181 CCER1Q8TC90 406 aaPredicted RBP14.67□□□□□ -0.06
LIG3-212ENST00000590181 CDCA7Q9BWT1 371 aaPredicted RBP14.67□□□□□ -0.06
LIG3-212ENST00000590181 PDGFDQ9GZP0 370 aaPredicted RBP14.67□□□□□ -0.06
LIG3-212ENST00000590181 USP47Q96K76 1375 aa14.67□□□□□ -0.06
LIG3-212ENST00000590181 MARCH10Q8NA82 808 aaPredicted RBP14.66□□□□□ -0.06
LIG3-212ENST00000590181 TUBGCP6Q96RT7 1819 aa14.66□□□□□ -0.06
LIG3-212ENST00000590181 ARHGEF25Q86VW2 580 aa14.65□□□□□ -0.06
LIG3-212ENST00000590181 SLC12A5Q9H2X9 1139 aa14.65□□□□□ -0.06
LIG3-212ENST00000590181 STK32BQ9NY57 414 aa14.65□□□□□ -0.06
LIG3-212ENST00000590181 PTGER2P43116 358 aa14.64□□□□□ -0.07
LIG3-212ENST00000590181 FAM208AQ9UK61 1670 aaKnown RBP14.63□□□□□ -0.07
LIG3-212ENST00000590181 ATF5Q9Y2D1 282 aaPredicted RBP14.63□□□□□ -0.07
LIG3-212ENST00000590181 CD163L1Q9NR16 1453 aa14.63□□□□□ -0.07
LIG3-212ENST00000590181 ANKRD36BQ8N2N9 1353 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 CCDC7Q96M83 1385 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 SOX12O15370 315 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 CSB-PGBD3P0DP91 1061 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 TXNRD1Q16881 649 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 PROM2Q8N271 834 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 ZNF784Q8NCA9 323 aaPredicted RBP14.62□□□□□ -0.07
LIG3-212ENST00000590181 FHDC1Q9C0D6 1143 aaPredicted RBP14.62□□□□□ -0.07
LIG3-212ENST00000590181 AXIN2Q9Y2T1 843 aa14.62□□□□□ -0.07
LIG3-212ENST00000590181 COL24A1Q17RW2 1714 aa14.61□□□□□ -0.07
LIG3-212ENST00000590181 DOT1LQ8TEK3 1739 aa14.61□□□□□ -0.07
LIG3-212ENST00000590181 A0A1W2PP64 1363 aa14.6□□□□□ -0.07
LIG3-212ENST00000590181 SLC15A2Q16348 729 aa14.6□□□□□ -0.07
LIG3-212ENST00000590181 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.6□□□□□ -0.07
LIG3-212ENST00000590181 CARD10Q9BWT7 1032 aa14.6□□□□□ -0.07
LIG3-212ENST00000590181 MTFR1LQ9H019 292 aa14.6□□□□□ -0.07
LIG3-212ENST00000590181 KAT6BQ8WYB5 2073 aa14.59□□□□□ -0.07
LIG3-212ENST00000590181 EIF4G2P78344 907 aaKnown RBP eCLIP14.59□□□□□ -0.07
LIG3-212ENST00000590181 COG3Q96JB2 828 aa14.59□□□□□ -0.07
LIG3-212ENST00000590181 SYT17Q9BSW7 474 aa14.58□□□□□ -0.08
LIG3-212ENST00000590181 MAP3K5Q99683 1374 aa14.58□□□□□ -0.08
LIG3-212ENST00000590181 SENP3-EIF4A1A0A087X0R7 540 aa14.57□□□□□ -0.08
LIG3-212ENST00000590181 SGIP1Q9BQI5 828 aa14.57□□□□□ -0.08
LIG3-212ENST00000590181 GOLGB1Q14789 3259 aaKnown RBP14.57□□□□□ -0.08
LIG3-212ENST00000590181 LY75O60449 1722 aa14.56□□□□□ -0.08
LIG3-212ENST00000590181 SHANK3Q9BYB0 1731 aa14.56□□□□□ -0.08
LIG3-212ENST00000590181 EXOC5O00471 708 aa14.56□□□□□ -0.08
LIG3-212ENST00000590181 NME9Q86XW9 330 aa14.56□□□□□ -0.08
LIG3-212ENST00000590181 ACSBG1Q96GR2 724 aa14.55□□□□□ -0.08
LIG3-212ENST00000590181 KIF24Q5T7B8 1368 aa14.55□□□□□ -0.08
LIG3-212ENST00000590181 ARXQ96QS3 562 aa14.54□□□□□ -0.08
LIG3-212ENST00000590181 ERBB3P21860 1342 aa14.54□□□□□ -0.08
LIG3-212ENST00000590181 ZNF827Q17R98 1081 aa14.53□□□□□ -0.08
LIG3-212ENST00000590181 IP6K1Q92551 441 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms