RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 CAMTA1Q9Y6Y1 1673 aa13.06□□□□□ -0.32
CCDC40-214ENST00000575431 CDK12Q9NYV4 1490 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-214ENST00000575431 COL18A1P39060 1754 aa13.06□□□□□ -0.32
CCDC40-214ENST00000575431 BLMP54132 1417 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-214ENST00000575431 AMPHP49418 695 aa13.05□□□□□ -0.32
CCDC40-214ENST00000575431 AMER1Q5JTC6 1135 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-214ENST00000575431 CCDC9Q9Y3X0 531 aaKnown RBP13.05□□□□□ -0.32
CCDC40-214ENST00000575431 RTL1A6NKG5 1358 aa13.05□□□□□ -0.32
CCDC40-214ENST00000575431 COL5A2P05997 1499 aaPredicted RBP13.04□□□□□ -0.32
CCDC40-214ENST00000575431 MORC1Q86VD1 984 aa13.04□□□□□ -0.32
CCDC40-214ENST00000575431 IP6K1Q92551 441 aa13.04□□□□□ -0.32
CCDC40-214ENST00000575431 STRN4Q9NRL3 753 aa13.04□□□□□ -0.32
CCDC40-214ENST00000575431 MAP3K19Q56UN5 1328 aa13.04□□□□□ -0.32
CCDC40-214ENST00000575431 AXIN2Q9Y2T1 843 aa13.03□□□□□ -0.32
CCDC40-214ENST00000575431 THRAP3Q9Y2W1 955 aaKnown RBP13.03□□□□□ -0.32
CCDC40-214ENST00000575431 SPATA31A5Q5VU36 1347 aa13.03□□□□□ -0.32
CCDC40-214ENST00000575431 SPATA31A7Q8IWB4 1347 aa13.03□□□□□ -0.32
CCDC40-214ENST00000575431 WDR17Q8IZU2 1322 aa13.03□□□□□ -0.32
CCDC40-214ENST00000575431 CRB1P82279 1406 aa13.03□□□□□ -0.32
CCDC40-214ENST00000575431 ONECUT3O60422 494 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-214ENST00000575431 CSB-PGBD3P0DP91 1061 aa13.02□□□□□ -0.33
CCDC40-214ENST00000575431 SPATA31A1Q5TZJ5 1347 aa13.02□□□□□ -0.33
CCDC40-214ENST00000575431 HOXC9P31274 260 aa13.01□□□□□ -0.33
CCDC40-214ENST00000575431 TOM1L2Q6ZVM7 507 aa13.01□□□□□ -0.33
CCDC40-214ENST00000575431 ERBB3P21860 1342 aa13.01□□□□□ -0.33
CCDC40-214ENST00000575431 FLT4P35916 1363 aa13.01□□□□□ -0.33
CCDC40-214ENST00000575431 GLI3P10071 1580 aa13.01□□□□□ -0.33
CCDC40-214ENST00000575431 RGPD5Q99666 1765 aa13.01□□□□□ -0.33
CCDC40-214ENST00000575431 MAP2P11137 1827 aaKnown RBP13.01□□□□□ -0.33
CCDC40-214ENST00000575431 ZNF316A6NFI3 1004 aaPredicted RBP13□□□□□ -0.33
CCDC40-214ENST00000575431 RRS1Q15050 365 aaKnown RBP13□□□□□ -0.33
CCDC40-214ENST00000575431 LARP1Q6PKG0 1096 aaKnown RBP13□□□□□ -0.33
CCDC40-214ENST00000575431 BARGINQ6ZT62 677 aa13□□□□□ -0.33
CCDC40-214ENST00000575431 TCP11L2Q8N4U5 519 aa13□□□□□ -0.33
CCDC40-214ENST00000575431 CARD10Q9BWT7 1032 aa13□□□□□ -0.33
CCDC40-214ENST00000575431 FAM208AQ9UK61 1670 aaKnown RBP12.99□□□□□ -0.33
CCDC40-214ENST00000575431 SMG6Q86US8 1419 aaKnown RBP12.99□□□□□ -0.33
CCDC40-214ENST00000575431 INSRP06213 1382 aa12.99□□□□□ -0.33
CCDC40-214ENST00000575431 FBLN1P23142 703 aa12.99□□□□□ -0.33
CCDC40-214ENST00000575431 CC2D1BQ5T0F9 858 aaKnown RBP12.99□□□□□ -0.33
CCDC40-214ENST00000575431 ANKRD24Q8TF21 1146 aa12.99□□□□□ -0.33
CCDC40-214ENST00000575431 CDCA7Q9BWT1 371 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-214ENST00000575431 POLKQ9UBT6 870 aa12.99□□□□□ -0.33
CCDC40-214ENST00000575431 ILDR2Q71H61 639 aa12.98□□□□□ -0.33
CCDC40-214ENST00000575431 PPM1GO15355 546 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-214ENST00000575431 TNNT2P45379 298 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-214ENST00000575431 DDX10Q13206 875 aaKnown RBP12.97□□□□□ -0.33
CCDC40-214ENST00000575431 USP35Q9P2H5 1018 aa12.97□□□□□ -0.33
CCDC40-214ENST00000575431 EMILIN1Q9Y6C2 1016 aa12.97□□□□□ -0.33
CCDC40-214ENST00000575431 RGS12O14924 1447 aa12.96□□□□□ -0.33
CCDC40-214ENST00000575431 FAM98CQ17RN3 349 aaKnown RBP12.96□□□□□ -0.33
CCDC40-214ENST00000575431 HSP90AB2PQ58FF8 381 aa12.96□□□□□ -0.33
CCDC40-214ENST00000575431 SEPT12Q8IYM1 358 aa12.96□□□□□ -0.33
CCDC40-214ENST00000575431 NLRP2Q9NX02 1062 aa12.96□□□□□ -0.33
CCDC40-214ENST00000575431 A0A0G2JS52 829 aa12.95□□□□□ -0.34
CCDC40-214ENST00000575431 MYT1Q01538 1121 aa12.95□□□□□ -0.34
CCDC40-214ENST00000575431 PEAK1Q9H792 1746 aa12.95□□□□□ -0.34
CCDC40-214ENST00000575431 THSD7AQ9UPZ6 1657 aa12.94□□□□□ -0.34
CCDC40-214ENST00000575431 LTV1Q96GA3 475 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-214ENST00000575431 MTHFSP49914 203 aa12.93□□□□□ -0.34
CCDC40-214ENST00000575431 RALBP1Q15311 655 aa12.92□□□□□ -0.34
CCDC40-214ENST00000575431 PARP4Q9UKK3 1724 aaKnown RBP12.92□□□□□ -0.34
CCDC40-214ENST00000575431 WNK3Q9BYP7 1800 aa12.91□□□□□ -0.34
CCDC40-214ENST00000575431 IL2RBP14784 551 aa12.91□□□□□ -0.34
CCDC40-214ENST00000575431 PDE3BQ13370 1112 aa12.91□□□□□ -0.34
CCDC40-214ENST00000575431 DDB1Q16531 1140 aa12.91□□□□□ -0.34
CCDC40-214ENST00000575431 KRT27Q7Z3Y8 459 aa12.91□□□□□ -0.34
CCDC40-214ENST00000575431 PARD3Q8TEW0 1356 aa12.91□□□□□ -0.34
CCDC40-214ENST00000575431 DISP2A7MBM2 1401 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 EXOC5O00471 708 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 SOCS7O14512 581 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 CNGB1Q14028 1251 aaPredicted RBP12.9□□□□□ -0.34
CCDC40-214ENST00000575431 NBPF6Q5VWK0 638 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 NBPF4Q96M43 638 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 CFAP53Q96M91 514 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 BRWD3Q6RI45 1802 aa12.9□□□□□ -0.34
CCDC40-214ENST00000575431 PPP2R1AP30153 589 aa12.89□□□□□ -0.35
CCDC40-214ENST00000575431 EIF4A2Q14240 407 aaKnown RBP12.89□□□□□ -0.35
CCDC40-214ENST00000575431 RAPGEF4Q8WZA2 1011 aa12.89□□□□□ -0.35
CCDC40-214ENST00000575431 PLEKHG2Q9H7P9 1386 aa12.89□□□□□ -0.35
CCDC40-214ENST00000575431 DIAPH1O60610 1272 aaKnown RBP12.88□□□□□ -0.35
CCDC40-214ENST00000575431 EYA1Q99502 592 aa12.88□□□□□ -0.35
CCDC40-214ENST00000575431 RGPD2P0DJD1 1756 aa12.88□□□□□ -0.35
CCDC40-214ENST00000575431 NCAPD2Q15021 1401 aa12.88□□□□□ -0.35
CCDC40-214ENST00000575431 TATP17735 454 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-214ENST00000575431 FAM196AQ6ZSG2 479 aa12.87□□□□□ -0.35
CCDC40-214ENST00000575431 CCDC125Q86Z20 511 aa12.87□□□□□ -0.35
CCDC40-214ENST00000575431 LRRC37A3O60309 1634 aa12.87□□□□□ -0.35
CCDC40-214ENST00000575431 IGSF1Q8N6C5 1336 aa12.87□□□□□ -0.35
CCDC40-214ENST00000575431 IL13P35225 146 aa12.86□□□□□ -0.35
CCDC40-214ENST00000575431 NUDCQ9Y266 331 aa12.86□□□□□ -0.35
CCDC40-214ENST00000575431 TNS2Q63HR2 1409 aa12.86□□□□□ -0.35
CCDC40-214ENST00000575431 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC40-214ENST00000575431 OVOS2A0A0G2JMS6 1433 aa12.85□□□□□ -0.35
CCDC40-214ENST00000575431 ZCRB1Q8TBF4 217 aaKnown RBP12.84□□□□□ -0.35
CCDC40-214ENST00000575431 PRKRIP1Q9H875 184 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-214ENST00000575431 MYBBP1AQ9BQG0 1328 aaKnown RBP12.84□□□□□ -0.35
CCDC40-214ENST00000575431 BCL9O00512 1426 aa12.83□□□□□ -0.36
CCDC40-214ENST00000575431 USHBP1Q8N6Y0 703 aa12.83□□□□□ -0.36
CCDC40-214ENST00000575431 SPG7Q9UQ90 795 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms