RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 FAM9BQ8IZU0 186 aa21.18■□□□□ 0.98
SMPD3-212ENST00000574662 IP6K1Q92551 441 aa21.18■□□□□ 0.98
SMPD3-212ENST00000574662 ANP32EQ9BTT0 268 aa21.18■□□□□ 0.98
SMPD3-212ENST00000574662 HAP1P54257 671 aaPredicted RBP21.17■□□□□ 0.98
SMPD3-212ENST00000574662 CDK12Q9NYV4 1490 aaPredicted RBP21.17■□□□□ 0.98
SMPD3-212ENST00000574662 CHRNA2Q15822 529 aa21.16■□□□□ 0.98
SMPD3-212ENST00000574662 AXIN2Q9Y2T1 843 aa21.16■□□□□ 0.98
SMPD3-212ENST00000574662 FLT4P35916 1363 aa21.16■□□□□ 0.98
SMPD3-212ENST00000574662 KIAA0232Q92628 1395 aa21.16■□□□□ 0.98
SMPD3-212ENST00000574662 DIAPH1O60610 1272 aaKnown RBP21.15■□□□□ 0.98
SMPD3-212ENST00000574662 COL22A1Q8NFW1 1626 aaPredicted RBP21.15■□□□□ 0.98
SMPD3-212ENST00000574662 KIF24Q5T7B8 1368 aa21.15■□□□□ 0.98
SMPD3-212ENST00000574662 IL13P35225 146 aa21.15■□□□□ 0.98
SMPD3-212ENST00000574662 EIF4A2Q14240 407 aaKnown RBP21.15■□□□□ 0.98
SMPD3-212ENST00000574662 RBM19Q9Y4C8 960 aaKnown RBP21.15■□□□□ 0.98
SMPD3-212ENST00000574662 LTN1O94822 1766 aa21.14■□□□□ 0.98
SMPD3-212ENST00000574662 ABCA3Q99758 1704 aa21.14■□□□□ 0.97
SMPD3-212ENST00000574662 CPDO75976 1380 aa21.14■□□□□ 0.97
SMPD3-212ENST00000574662 ADAMTS8Q9UP79 889 aa21.14■□□□□ 0.97
SMPD3-212ENST00000574662 JCADQ9P266 1359 aa21.13■□□□□ 0.97
SMPD3-212ENST00000574662 FAM83GA6ND36 823 aa21.13■□□□□ 0.97
SMPD3-212ENST00000574662 RTL1A6NKG5 1358 aa21.12■□□□□ 0.97
SMPD3-212ENST00000574662 NUTM2BA6NNL0 878 aaPredicted RBP21.12■□□□□ 0.97
SMPD3-212ENST00000574662 NUTM2EB1AL46 878 aaPredicted RBP21.12■□□□□ 0.97
SMPD3-212ENST00000574662 NUTM2AQ8IVF1 878 aaPredicted RBP21.12■□□□□ 0.97
SMPD3-212ENST00000574662 WDR43Q15061 677 aaKnown RBP eCLIP21.11■□□□□ 0.97
SMPD3-212ENST00000574662 LTV1Q96GA3 475 aaPredicted RBP21.11■□□□□ 0.97
SMPD3-212ENST00000574662 PRDM11Q9NQV5 511 aa21.11■□□□□ 0.97
SMPD3-212ENST00000574662 PPP4R2Q9NY27 417 aa21.11■□□□□ 0.97
SMPD3-212ENST00000574662 SHPRHQ149N8 1683 aa21.11■□□□□ 0.97
SMPD3-212ENST00000574662 U2SURPO15042 1029 aaKnown RBP21.1■□□□□ 0.97
SMPD3-212ENST00000574662 NUDCQ9Y266 331 aa21.1■□□□□ 0.97
SMPD3-212ENST00000574662 COL18A1P39060 1754 aa21.09■□□□□ 0.97
SMPD3-212ENST00000574662 ADAMTS2O95450 1211 aa21.08■□□□□ 0.97
SMPD3-212ENST00000574662 U2AF1L5P0DN76 240 aaPredicted RBP21.08■□□□□ 0.97
SMPD3-212ENST00000574662 U2AF1Q01081 240 aaKnown RBP eCLIP21.08■□□□□ 0.97
SMPD3-212ENST00000574662 ANKRD24Q8TF21 1146 aa21.06■□□□□ 0.96
SMPD3-212ENST00000574662 EYA1Q99502 592 aa21.06■□□□□ 0.96
SMPD3-212ENST00000574662 BLMP54132 1417 aaPredicted RBP21.05■□□□□ 0.96
SMPD3-212ENST00000574662 RGPD5Q99666 1765 aa21.05■□□□□ 0.96
SMPD3-212ENST00000574662 CAMTA1Q9Y6Y1 1673 aa21.05■□□□□ 0.96
SMPD3-212ENST00000574662 HMOX1P09601 288 aa21.04■□□□□ 0.96
SMPD3-212ENST00000574662 SPATA31A6Q5VVP1 1343 aa21.03■□□□□ 0.96
SMPD3-212ENST00000574662 NBPF6Q5VWK0 638 aa21.03■□□□□ 0.96
SMPD3-212ENST00000574662 NBPF4Q96M43 638 aa21.03■□□□□ 0.96
SMPD3-212ENST00000574662 ERBB3P21860 1342 aa21.03■□□□□ 0.96
SMPD3-212ENST00000574662 SENP3-EIF4A1A0A087X0R7 540 aa21.02■□□□□ 0.96
SMPD3-212ENST00000574662 IRX6P78412 446 aaPredicted RBP21.02■□□□□ 0.96
SMPD3-212ENST00000574662 AEBP1Q8IUX7 1158 aa21.02■□□□□ 0.96
SMPD3-212ENST00000574662 CCDC146Q8IYE0 955 aa21.02■□□□□ 0.96
SMPD3-212ENST00000574662 LMO7Q8WWI1 1683 aa21.02■□□□□ 0.96
SMPD3-212ENST00000574662 SULT6B1Q6IMI4 303 aa21.01■□□□□ 0.95
SMPD3-212ENST00000574662 PHF23Q9BUL5 403 aaPredicted RBP21.01■□□□□ 0.95
SMPD3-212ENST00000574662 BTG4Q9NY30 223 aa21.01■□□□□ 0.95
SMPD3-212ENST00000574662 ABCC6O95255 1503 aa21.01■□□□□ 0.95
SMPD3-212ENST00000574662 IGSF1Q8N6C5 1336 aa21.01■□□□□ 0.95
SMPD3-212ENST00000574662 USHBP1Q8N6Y0 703 aa21■□□□□ 0.95
SMPD3-212ENST00000574662 RSPH6AQ9H0K4 717 aa21■□□□□ 0.95
SMPD3-212ENST00000574662 LRP6O75581 1613 aa21■□□□□ 0.95
SMPD3-212ENST00000574662 PLEKHF1Q96S99 279 aa21■□□□□ 0.95
SMPD3-212ENST00000574662 RGPD1P0DJD0 1748 aa20.99■□□□□ 0.95
SMPD3-212ENST00000574662 FANCIQ9NVI1 1328 aa20.99■□□□□ 0.95
SMPD3-212ENST00000574662 FCHSD2O94868 740 aa20.99■□□□□ 0.95
SMPD3-212ENST00000574662 STRN4Q9NRL3 753 aa20.98■□□□□ 0.95
SMPD3-212ENST00000574662 CSB-PGBD3P0DP91 1061 aa20.97■□□□□ 0.95
SMPD3-212ENST00000574662 COL5A2P05997 1499 aaPredicted RBP20.97■□□□□ 0.95
SMPD3-212ENST00000574662 COL14A1Q05707 1796 aaKnown RBP20.97■□□□□ 0.95
SMPD3-212ENST00000574662 PRKAR2BP31323 418 aa20.97■□□□□ 0.95
SMPD3-212ENST00000574662 EVA1CP58658 441 aa20.97■□□□□ 0.95
SMPD3-212ENST00000574662 NLRP2Q9NX02 1062 aa20.97■□□□□ 0.95
SMPD3-212ENST00000574662 RGPD2P0DJD1 1756 aa20.96■□□□□ 0.95
SMPD3-212ENST00000574662 LARP1Q6PKG0 1096 aaKnown RBP20.96■□□□□ 0.95
SMPD3-212ENST00000574662 RUNDC1Q96C34 613 aa20.96■□□□□ 0.95
SMPD3-212ENST00000574662 C8orf37Q96NL8 207 aa20.96■□□□□ 0.95
SMPD3-212ENST00000574662 WDR17Q8IZU2 1322 aa20.96■□□□□ 0.95
SMPD3-212ENST00000574662 PHACTR3Q96KR7 559 aa20.95■□□□□ 0.94
SMPD3-212ENST00000574662 KDRP35968 1356 aa20.95■□□□□ 0.94
SMPD3-212ENST00000574662 APAF1O14727 1248 aa20.94■□□□□ 0.94
SMPD3-212ENST00000574662 NGLY1Q96IV0 654 aa20.94■□□□□ 0.94
SMPD3-212ENST00000574662 TOM1L2Q6ZVM7 507 aa20.92■□□□□ 0.94
SMPD3-212ENST00000574662 SLIT2O94813 1529 aa20.92■□□□□ 0.94
SMPD3-212ENST00000574662 NCAPD2Q15021 1401 aa20.92■□□□□ 0.94
SMPD3-212ENST00000574662 ILDR2Q71H61 639 aa20.92■□□□□ 0.94
SMPD3-212ENST00000574662 TCP11L2Q8N4U5 519 aa20.92■□□□□ 0.94
SMPD3-212ENST00000574662 PNNQ9H307 717 aaKnown RBP20.92■□□□□ 0.94
SMPD3-212ENST00000574662 FNBP4Q8N3X1 1017 aaPredicted RBP20.91■□□□□ 0.94
SMPD3-212ENST00000574662 SALL2Q9Y467 1007 aaPredicted RBP20.91■□□□□ 0.94
SMPD3-212ENST00000574662 RNF123Q5XPI4 1314 aa20.91■□□□□ 0.94
SMPD3-212ENST00000574662 PLCH1Q4KWH8 1693 aa20.9■□□□□ 0.94
SMPD3-212ENST00000574662 MEX3CQ5U5Q3 659 aaKnown RBP20.9■□□□□ 0.94
SMPD3-212ENST00000574662 CARD10Q9BWT7 1032 aa20.9■□□□□ 0.94
SMPD3-212ENST00000574662 RRP7AQ9Y3A4 280 aaKnown RBP20.9■□□□□ 0.94
SMPD3-212ENST00000574662 BCL9LQ86UU0 1499 aa20.88■□□□□ 0.93
SMPD3-212ENST00000574662 MAPK8IP3Q9UPT6 1336 aa20.87■□□□□ 0.93
SMPD3-212ENST00000574662 UNC5CLQ8IV45 518 aa20.87■□□□□ 0.93
SMPD3-212ENST00000574662 USP35Q9P2H5 1018 aa20.87■□□□□ 0.93
SMPD3-212ENST00000574662 CRB1P82279 1406 aa20.87■□□□□ 0.93
SMPD3-212ENST00000574662 TMPOP42166 694 aaKnown RBP20.87■□□□□ 0.93
SMPD3-212ENST00000574662 NEUROD2Q15784 382 aa20.87■□□□□ 0.93
SMPD3-212ENST00000574662 FAM208AQ9UK61 1670 aaKnown RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms