RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 THRAP3Q9Y2W1 955 aaKnown RBP9.68□□□□□ -0.86
VPS53-213ENST00000572334 R3HDM1Q15032 1099 aaKnown RBP9.67□□□□□ -0.86
VPS53-213ENST00000572334 LTN1O94822 1766 aa9.67□□□□□ -0.86
VPS53-213ENST00000572334 SBNO2Q9Y2G9 1366 aa9.66□□□□□ -0.86
VPS53-213ENST00000572334 ARHGEF25Q86VW2 580 aa9.66□□□□□ -0.86
VPS53-213ENST00000572334 PARD3Q8TEW0 1356 aa9.65□□□□□ -0.86
VPS53-213ENST00000572334 APBA3O96018 575 aa9.65□□□□□ -0.86
VPS53-213ENST00000572334 PDE3BQ13370 1112 aa9.65□□□□□ -0.86
VPS53-213ENST00000572334 PTF1AQ7RTS3 328 aa9.65□□□□□ -0.86
VPS53-213ENST00000572334 PELP1Q8IZL8 1130 aaKnown RBP9.65□□□□□ -0.86
VPS53-213ENST00000572334 WDR17Q8IZU2 1322 aa9.64□□□□□ -0.87
VPS53-213ENST00000572334 TTC21AQ8NDW8 1320 aa9.64□□□□□ -0.87
VPS53-213ENST00000572334 ZNF692Q9BU19 519 aaPredicted RBP9.64□□□□□ -0.87
VPS53-213ENST00000572334 ABCC6O95255 1503 aa9.64□□□□□ -0.87
VPS53-213ENST00000572334 OVOS2A0A0G2JMS6 1433 aa9.64□□□□□ -0.87
VPS53-213ENST00000572334 OVOS2A0A0J9YW53 1432 aa9.64□□□□□ -0.87
VPS53-213ENST00000572334 OVOS2Q6IE36 1432 aa9.64□□□□□ -0.87
VPS53-213ENST00000572334 USP31Q70CQ4 1352 aa9.63□□□□□ -0.87
VPS53-213ENST00000572334 CASZ1Q86V15 1759 aa9.63□□□□□ -0.87
VPS53-213ENST00000572334 ZBTB7CA1YPR0 619 aa9.63□□□□□ -0.87
VPS53-213ENST00000572334 MARCH10Q8NA82 808 aaPredicted RBP9.63□□□□□ -0.87
VPS53-213ENST00000572334 KAT6BQ8WYB5 2073 aa9.63□□□□□ -0.87
VPS53-213ENST00000572334 BCL9O00512 1426 aa9.63□□□□□ -0.87
VPS53-213ENST00000572334 KTN1Q86UP2 1357 aaKnown RBP9.63□□□□□ -0.87
VPS53-213ENST00000572334 TOM1L2Q6ZVM7 507 aa9.62□□□□□ -0.87
VPS53-213ENST00000572334 RGPD2P0DJD1 1756 aa9.61□□□□□ -0.87
VPS53-213ENST00000572334 DDB1Q16531 1140 aa9.61□□□□□ -0.87
VPS53-213ENST00000572334 PROM2Q8N271 834 aa9.61□□□□□ -0.87
VPS53-213ENST00000572334 KCNH5Q8NCM2 988 aa9.61□□□□□ -0.87
VPS53-213ENST00000572334 CARD10Q9BWT7 1032 aa9.61□□□□□ -0.87
VPS53-213ENST00000572334 PLSCR1O15162 318 aa9.6□□□□□ -0.87
VPS53-213ENST00000572334 SOX12O15370 315 aa9.6□□□□□ -0.87
VPS53-213ENST00000572334 NME9Q86XW9 330 aa9.6□□□□□ -0.87
VPS53-213ENST00000572334 CARD11Q9BXL7 1154 aa9.6□□□□□ -0.87
VPS53-213ENST00000572334 SLC12A5Q9H2X9 1139 aa9.6□□□□□ -0.87
VPS53-213ENST00000572334 NHSQ6T4R5 1651 aa9.6□□□□□ -0.87
VPS53-213ENST00000572334 BTAF1O14981 1849 aa9.59□□□□□ -0.87
VPS53-213ENST00000572334 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.59□□□□□ -0.871e-6■■■■□ 22.9
VPS53-213ENST00000572334 TESK2Q96S53 571 aa9.59□□□□□ -0.87
VPS53-213ENST00000572334 ANO8Q9HCE9 1232 aaPredicted RBP9.59□□□□□ -0.87
VPS53-213ENST00000572334 A0A1W2PP64 1363 aa9.59□□□□□ -0.87
VPS53-213ENST00000572334 SHANK3Q9BYB0 1731 aa9.59□□□□□ -0.87
VPS53-213ENST00000572334 ERBB3P21860 1342 aa9.58□□□□□ -0.88
VPS53-213ENST00000572334 TNS2Q63HR2 1409 aa9.58□□□□□ -0.88
VPS53-213ENST00000572334 EDC4Q6P2E9 1401 aaKnown RBP9.58□□□□□ -0.88
VPS53-213ENST00000572334 C11orf95C9JLR9 678 aaPredicted RBP9.58□□□□□ -0.88
VPS53-213ENST00000572334 BCL11BQ9C0K0 894 aaPredicted RBP9.58□□□□□ -0.88
VPS53-213ENST00000572334 CCDC7Q96M83 1385 aa9.58□□□□□ -0.88
VPS53-213ENST00000572334 UTRNP46939 3433 aa9.58□□□□□ -0.88
VPS53-213ENST00000572334 FAM208AQ9UK61 1670 aaKnown RBP9.58□□□□□ -0.88
VPS53-213ENST00000572334 PAPPAQ13219 1627 aa9.57□□□□□ -0.88
VPS53-213ENST00000572334 PUS7Q96PZ0 661 aaKnown RBP9.57□□□□□ -0.88
VPS53-213ENST00000572334 CDCA7Q9BWT1 371 aaPredicted RBP9.57□□□□□ -0.88
VPS53-213ENST00000572334 PDGFDQ9GZP0 370 aaPredicted RBP9.57□□□□□ -0.88
VPS53-213ENST00000572334 TONSLQ96HA7 1378 aa9.56□□□□□ -0.88
VPS53-213ENST00000572334 KCNQ2O43526 872 aa9.56□□□□□ -0.88
VPS53-213ENST00000572334 NBPF14Q5TI25 921 aa9.56□□□□□ -0.88
VPS53-213ENST00000572334 MYOM1P52179 1685 aa9.55□□□□□ -0.88
VPS53-213ENST00000572334 ST20-MTHFSA0A0A6YYL1 179 aa9.55□□□□□ -0.88
VPS53-213ENST00000572334 EXOC5O00471 708 aa9.55□□□□□ -0.88
VPS53-213ENST00000572334 CSB-PGBD3P0DP91 1061 aa9.55□□□□□ -0.88
VPS53-213ENST00000572334 TMC1Q8TDI8 760 aa9.55□□□□□ -0.88
VPS53-213ENST00000572334 TUBGCP6Q96RT7 1819 aa9.54□□□□□ -0.88
VPS53-213ENST00000572334 FBLN1P23142 703 aa9.54□□□□□ -0.88
VPS53-213ENST00000572334 HDGFL2Q7Z4V5 671 aaPredicted RBP9.54□□□□□ -0.88
VPS53-213ENST00000572334 ANKRD24Q8TF21 1146 aa9.54□□□□□ -0.88
VPS53-213ENST00000572334 TXNRD1Q16881 649 aa9.53□□□□□ -0.88
VPS53-213ENST00000572334 KIF20BQ96Q89 1820 aa9.53□□□□□ -0.88
VPS53-213ENST00000572334 COL24A1Q17RW2 1714 aa9.53□□□□□ -0.88
VPS53-213ENST00000572334 QSER1Q2KHR3 1735 aa9.53□□□□□ -0.88
VPS53-213ENST00000572334 LY75O60449 1722 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 IL2RBP14784 551 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 PTGER2P43116 358 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 DOT1LQ8TEK3 1739 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 IP6K1Q92551 441 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 ACSBG1Q96GR2 724 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 SPON1Q9HCB6 807 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 NLRP2Q9NX02 1062 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 TERF2IPQ9NYB0 399 aa9.52□□□□□ -0.89
VPS53-213ENST00000572334 NINLQ9Y2I6 1382 aa9.51□□□□□ -0.89
VPS53-213ENST00000572334 MAP3K19Q56UN5 1328 aa9.51□□□□□ -0.89
VPS53-213ENST00000572334 ANKRD36BQ8N2N9 1353 aa9.5□□□□□ -0.89
VPS53-213ENST00000572334 CACNB1Q02641 598 aaPredicted RBP9.5□□□□□ -0.89
VPS53-213ENST00000572334 SLC15A2Q16348 729 aa9.5□□□□□ -0.89
VPS53-213ENST00000572334 SGIP1Q9BQI5 828 aa9.5□□□□□ -0.89
VPS53-213ENST00000572334 LRRC4BQ9NT99 713 aa9.5□□□□□ -0.89
VPS53-213ENST00000572334 MEGF6O75095 1541 aa9.5□□□□□ -0.89
VPS53-213ENST00000572334 ZBTB7AO95365 584 aa9.49□□□□□ -0.89
VPS53-213ENST00000572334 HOXC9P31274 260 aa9.49□□□□□ -0.89
VPS53-213ENST00000572334 NSD2O96028 1365 aa9.49□□□□□ -0.89
VPS53-213ENST00000572334 USP47Q96K76 1375 aa9.49□□□□□ -0.89
VPS53-213ENST00000572334 CHD4Q14839 1912 aa9.48□□□□□ -0.89
VPS53-213ENST00000572334 ANKRD26Q9UPS8 1709 aa9.48□□□□□ -0.89
VPS53-213ENST00000572334 MAP2P11137 1827 aaKnown RBP9.48□□□□□ -0.89
VPS53-213ENST00000572334 FYB1O15117 783 aa9.48□□□□□ -0.89
VPS53-213ENST00000572334 ZNF827Q17R98 1081 aa9.48□□□□□ -0.89
VPS53-213ENST00000572334 LTV1Q96GA3 475 aaPredicted RBP9.48□□□□□ -0.89
VPS53-213ENST00000572334 ITGB4P16144 1822 aa9.47□□□□□ -0.89
VPS53-213ENST00000572334 TAF1LQ8IZX4 1826 aa9.47□□□□□ -0.89
VPS53-213ENST00000572334 TRIM26Q12899 539 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms