RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SPATA31A7Q8IWB4 1347 aa13.6□□□□□ -0.23
CLK3-220ENST00000567992 CCDC7Q96M83 1385 aa13.59□□□□□ -0.23
CLK3-220ENST00000567992 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
CLK3-220ENST00000567992 PEAK1Q9H792 1746 aa13.59□□□□□ -0.23
CLK3-220ENST00000567992 GGNBP2Q9H3C7 697 aa13.58□□□□□ -0.24
CLK3-220ENST00000567992 WASHC2AQ641Q2 1341 aa13.58□□□□□ -0.24
CLK3-220ENST00000567992 ONECUT3O60422 494 aaPredicted RBP13.57□□□□□ -0.24
CLK3-220ENST00000567992 COG3Q96JB2 828 aa13.57□□□□□ -0.24
CLK3-220ENST00000567992 PANK3Q9H999 370 aa13.57□□□□□ -0.24
CLK3-220ENST00000567992 STRN4Q9NRL3 753 aa13.57□□□□□ -0.24
CLK3-220ENST00000567992 SPATA31A1Q5TZJ5 1347 aa13.57□□□□□ -0.24
CLK3-220ENST00000567992 ZBTB7CA1YPR0 619 aa13.56□□□□□ -0.24
CLK3-220ENST00000567992 LARP1Q6PKG0 1096 aaKnown RBP13.56□□□□□ -0.24
CLK3-220ENST00000567992 CRB1P82279 1406 aa13.56□□□□□ -0.24
CLK3-220ENST00000567992 FBLN1P23142 703 aa13.55□□□□□ -0.24
CLK3-220ENST00000567992 FAM208AQ9UK61 1670 aaKnown RBP13.55□□□□□ -0.24
CLK3-220ENST00000567992 PARP4Q9UKK3 1724 aaKnown RBP13.55□□□□□ -0.24
CLK3-220ENST00000567992 CCDC9Q9Y3X0 531 aaKnown RBP13.54□□□□□ -0.24
CLK3-220ENST00000567992 CGNL1Q0VF96 1302 aa13.54□□□□□ -0.24
CLK3-220ENST00000567992 MAP3K19Q56UN5 1328 aa13.54□□□□□ -0.24
CLK3-220ENST00000567992 WDR17Q8IZU2 1322 aa13.54□□□□□ -0.24
CLK3-220ENST00000567992 BLMP54132 1417 aaPredicted RBP13.54□□□□□ -0.24
CLK3-220ENST00000567992 LRRC37A3O60309 1634 aa13.53□□□□□ -0.24
CLK3-220ENST00000567992 FAM98CQ17RN3 349 aaKnown RBP13.53□□□□□ -0.24
CLK3-220ENST00000567992 SEPT12Q8IYM1 358 aa13.53□□□□□ -0.24
CLK3-220ENST00000567992 RTL1A6NKG5 1358 aa13.53□□□□□ -0.24
CLK3-220ENST00000567992 EVA1CP58658 441 aa13.52□□□□□ -0.25
CLK3-220ENST00000567992 ERBB3P21860 1342 aa13.52□□□□□ -0.25
CLK3-220ENST00000567992 NSD2O96028 1365 aa13.52□□□□□ -0.25
CLK3-220ENST00000567992 RGPD2P0DJD1 1756 aa13.52□□□□□ -0.25
CLK3-220ENST00000567992 MAP2P11137 1827 aaKnown RBP13.52□□□□□ -0.25
CLK3-220ENST00000567992 DISP2A7MBM2 1401 aa13.51□□□□□ -0.25
CLK3-220ENST00000567992 RRS1Q15050 365 aaKnown RBP13.51□□□□□ -0.25
CLK3-220ENST00000567992 BARGINQ6ZT62 677 aa13.51□□□□□ -0.25
CLK3-220ENST00000567992 IP6K1Q92551 441 aa13.51□□□□□ -0.25
CLK3-220ENST00000567992 PER1O15534 1290 aaPredicted RBP13.5□□□□□ -0.25
CLK3-220ENST00000567992 HOXC9P31274 260 aa13.5□□□□□ -0.25
CLK3-220ENST00000567992 AMER1Q5JTC6 1135 aaPredicted RBP13.5□□□□□ -0.25
CLK3-220ENST00000567992 TCP11L2Q8N4U5 519 aa13.5□□□□□ -0.25
CLK3-220ENST00000567992 USP35Q9P2H5 1018 aa13.5□□□□□ -0.25
CLK3-220ENST00000567992 SMG6Q86US8 1419 aaKnown RBP13.49□□□□□ -0.25
CLK3-220ENST00000567992 KIF24Q5T7B8 1368 aa13.49□□□□□ -0.25
CLK3-220ENST00000567992 THRAP3Q9Y2W1 955 aaKnown RBP13.49□□□□□ -0.25
CLK3-220ENST00000567992 FLT4P35916 1363 aa13.48□□□□□ -0.25
CLK3-220ENST00000567992 TOM1L2Q6ZVM7 507 aa13.48□□□□□ -0.25
CLK3-220ENST00000567992 ANKRD24Q8TF21 1146 aa13.48□□□□□ -0.25
CLK3-220ENST00000567992 CARD10Q9BWT7 1032 aa13.48□□□□□ -0.25
CLK3-220ENST00000567992 UPF1Q92900 1129 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLK3-220ENST00000567992 EMILIN1Q9Y6C2 1016 aa13.47□□□□□ -0.25
CLK3-220ENST00000567992 INSRP06213 1382 aa13.46□□□□□ -0.25
CLK3-220ENST00000567992 CSB-PGBD3P0DP91 1061 aa13.46□□□□□ -0.25
CLK3-220ENST00000567992 AMPHP49418 695 aa13.46□□□□□ -0.25
CLK3-220ENST00000567992 KRT27Q7Z3Y8 459 aa13.46□□□□□ -0.25
CLK3-220ENST00000567992 KNSTRNQ9Y448 316 aa13.46□□□□□ -0.25
CLK3-220ENST00000567992 SHANK3Q9BYB0 1731 aa13.45□□□□□ -0.26
CLK3-220ENST00000567992 TNS1Q9HBL0 1735 aaKnown RBP13.45□□□□□ -0.26
CLK3-220ENST00000567992 A0A0G2JS52 829 aa13.45□□□□□ -0.26
CLK3-220ENST00000567992 ZEB1P37275 1124 aaPredicted RBP13.45□□□□□ -0.26
CLK3-220ENST00000567992 MYT1Q01538 1121 aa13.45□□□□□ -0.26
CLK3-220ENST00000567992 HSP90AB2PQ58FF8 381 aa13.45□□□□□ -0.26
CLK3-220ENST00000567992 NPC1L1Q9UHC9 1359 aa13.45□□□□□ -0.26
CLK3-220ENST00000567992 POLKQ9UBT6 870 aa13.44□□□□□ -0.26
CLK3-220ENST00000567992 NCAPD2Q15021 1401 aa13.44□□□□□ -0.26
CLK3-220ENST00000567992 RGPD1P0DJD0 1748 aa13.43□□□□□ -0.26
CLK3-220ENST00000567992 TNS2Q63HR2 1409 aa13.43□□□□□ -0.26
CLK3-220ENST00000567992 LTV1Q96GA3 475 aaPredicted RBP13.43□□□□□ -0.26
CLK3-220ENST00000567992 NLRP2Q9NX02 1062 aa13.43□□□□□ -0.26
CLK3-220ENST00000567992 TNNT2P45379 298 aaPredicted RBP13.42□□□□□ -0.26
CLK3-220ENST00000567992 FAM182BQ5T319 152 aa13.42□□□□□ -0.26
CLK3-220ENST00000567992 MEGF6O75095 1541 aa13.42□□□□□ -0.26
CLK3-220ENST00000567992 SBF2Q86WG5 1849 aa13.41□□□□□ -0.26
CLK3-220ENST00000567992 MORC1Q86VD1 984 aa13.41□□□□□ -0.26
CLK3-220ENST00000567992 CDCA7Q9BWT1 371 aaPredicted RBP13.41□□□□□ -0.26
CLK3-220ENST00000567992 CC2D1BQ5T0F9 858 aaKnown RBP13.4□□□□□ -0.26
CLK3-220ENST00000567992 NBPF6Q5VWK0 638 aa13.4□□□□□ -0.26
CLK3-220ENST00000567992 NBPF4Q96M43 638 aa13.4□□□□□ -0.26
CLK3-220ENST00000567992 PKD1L3Q7Z443 1732 aa13.39□□□□□ -0.27
CLK3-220ENST00000567992 DDB1Q16531 1140 aa13.39□□□□□ -0.27
CLK3-220ENST00000567992 OVOS2A0A0G2JMS6 1433 aa13.39□□□□□ -0.27
CLK3-220ENST00000567992 PPM1GO15355 546 aaPredicted RBP13.38□□□□□ -0.27
CLK3-220ENST00000567992 IL2RBP14784 551 aa13.38□□□□□ -0.27
CLK3-220ENST00000567992 USHBP1Q8N6Y0 703 aa13.38□□□□□ -0.27
CLK3-220ENST00000567992 BCL9O00512 1426 aa13.38□□□□□ -0.27
CLK3-220ENST00000567992 COL3A1P02461 1466 aaPredicted RBP13.37□□□□□ -0.27
CLK3-220ENST00000567992 PDE3BQ13370 1112 aa13.37□□□□□ -0.27
CLK3-220ENST00000567992 EIF4A2Q14240 407 aaKnown RBP13.37□□□□□ -0.27
CLK3-220ENST00000567992 MARCH10Q8NA82 808 aaPredicted RBP13.37□□□□□ -0.27
CLK3-220ENST00000567992 NHSQ6T4R5 1651 aa13.36□□□□□ -0.27
CLK3-220ENST00000567992 FAM196AQ6ZSG2 479 aa13.35□□□□□ -0.27
CLK3-220ENST00000567992 CCDC125Q86Z20 511 aa13.35□□□□□ -0.27
CLK3-220ENST00000567992 POTEDQ86YR6 584 aa13.34□□□□□ -0.27
CLK3-220ENST00000567992 EYA1Q99502 592 aa13.34□□□□□ -0.27
CLK3-220ENST00000567992 RGPD3A6NKT7 1758 aaPredicted RBP13.34□□□□□ -0.27
CLK3-220ENST00000567992 RGPD4Q7Z3J3 1758 aa13.34□□□□□ -0.27
CLK3-220ENST00000567992 IGSF1Q8N6C5 1336 aa13.34□□□□□ -0.27
CLK3-220ENST00000567992 DOT1LQ8TEK3 1739 aa13.33□□□□□ -0.27
CLK3-220ENST00000567992 EXOC5O00471 708 aa13.33□□□□□ -0.28
CLK3-220ENST00000567992 MTHFSP49914 203 aa13.33□□□□□ -0.28
CLK3-220ENST00000567992 RREB1Q92766 1687 aa13.33□□□□□ -0.28
CLK3-220ENST00000567992 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms