RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 FAM98CQ17RN3 349 aaKnown RBP6.78□□□□□ -1.32
CLK3-219ENST00000567805 KRT27Q7Z3Y8 459 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 WNK3Q9BYP7 1800 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 TTC21AQ8NDW8 1320 aa6.77□□□□□ -1.32
CLK3-219ENST00000567805 CLSPNQ9HAW4 1339 aa6.77□□□□□ -1.32
CLK3-219ENST00000567805 LTN1O94822 1766 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 PARP4Q9UKK3 1724 aaKnown RBP6.77□□□□□ -1.33
CLK3-219ENST00000567805 A0A0G2JS52 829 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 SLC24A1O60721 1099 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 NLRP6P59044 892 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 MYT1Q01538 1121 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 LHX8Q68G74 356 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 PUS7Q96PZ0 661 aaKnown RBP6.77□□□□□ -1.33
CLK3-219ENST00000567805 KTN1Q86UP2 1357 aaKnown RBP6.77□□□□□ -1.33
CLK3-219ENST00000567805 SRCAPQ6ZRS2 3230 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 COL5A2P05997 1499 aaPredicted RBP6.77□□□□□ -1.33
CLK3-219ENST00000567805 CD163L1Q9NR16 1453 aa6.77□□□□□ -1.33
CLK3-219ENST00000567805 SPATA31A1Q5TZJ5 1347 aa6.76□□□□□ -1.33
CLK3-219ENST00000567805 TTC21BQ7Z4L5 1316 aa6.76□□□□□ -1.33
CLK3-219ENST00000567805 ABCC6O95255 1503 aa6.76□□□□□ -1.33
CLK3-219ENST00000567805 TNS1Q9HBL0 1735 aaKnown RBP6.76□□□□□ -1.33
CLK3-219ENST00000567805 EVA1CP58658 441 aa6.76□□□□□ -1.33
CLK3-219ENST00000567805 STRN4Q9NRL3 753 aa6.76□□□□□ -1.33
CLK3-219ENST00000567805 NFAT5O94916 1531 aa6.76□□□□□ -1.33
CLK3-219ENST00000567805 AATKQ6ZMQ8 1374 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 NINLQ9Y2I6 1382 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 PRKAR2AP13861 404 aaKnown RBP6.75□□□□□ -1.33
CLK3-219ENST00000567805 SF3B2Q13435 895 aaKnown RBP6.75□□□□□ -1.33
CLK3-219ENST00000567805 BARGINQ6ZT62 677 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 KCNH5Q8NCM2 988 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 TESK2Q96S53 571 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 TIMELESSQ9UNS1 1208 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 CRB1P82279 1406 aa6.75□□□□□ -1.33
CLK3-219ENST00000567805 EDC4Q6P2E9 1401 aaKnown RBP6.75□□□□□ -1.33
CLK3-219ENST00000567805 USP31Q70CQ4 1352 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 USP47Q96K76 1375 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 ST20-MTHFSA0A0A6YYL1 179 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 C19orf67A6NJJ6 358 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 GABBR2O75899 941 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 LARP1Q6PKG0 1096 aaKnown RBP6.74□□□□□ -1.33
CLK3-219ENST00000567805 HDGFL2Q7Z4V5 671 aaPredicted RBP6.74□□□□□ -1.33
CLK3-219ENST00000567805 TMC1Q8TDI8 760 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 TERF2IPQ9NYB0 399 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 USP35Q9P2H5 1018 aa6.74□□□□□ -1.33
CLK3-219ENST00000567805 THRAP3Q9Y2W1 955 aaKnown RBP6.74□□□□□ -1.33
CLK3-219ENST00000567805 SBF2Q86WG5 1849 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 A0A1W2PP64 1363 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 LRRC37A3O60309 1634 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 ZBTB7CA1YPR0 619 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 ARHGEF25Q86VW2 580 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 TCP11L2Q8N4U5 519 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 PCGF6Q9BYE7 350 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 SLC12A5Q9H2X9 1139 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 FAM208AQ9UK61 1670 aaKnown RBP6.73□□□□□ -1.33
CLK3-219ENST00000567805 KIF20BQ96Q89 1820 aa6.73□□□□□ -1.33
CLK3-219ENST00000567805 MYOM1P52179 1685 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 BAG6P46379 1132 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 TMF1P82094 1093 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 FAM196AQ6ZSG2 479 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.72□□□□□ -1.33
CLK3-219ENST00000567805 ZRANB1Q9UGI0 708 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 DISP2A7MBM2 1401 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 PEAK1Q9H792 1746 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 WDR17Q8IZU2 1322 aa6.72□□□□□ -1.33
CLK3-219ENST00000567805 ANKRD36BQ8N2N9 1353 aa6.71□□□□□ -1.33
CLK3-219ENST00000567805 OVOS2A0A0J9YW53 1432 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 OVOS2Q6IE36 1432 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 SOX12O15370 315 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 PDE3BQ13370 1112 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 FAM182BQ5T319 152 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 TOM1L2Q6ZVM7 507 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 DEFB132Q7Z7B7 95 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 NME9Q86XW9 330 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 AXIN2Q9Y2T1 843 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 RGPD3A6NKT7 1758 aaPredicted RBP6.71□□□□□ -1.34
CLK3-219ENST00000567805 RGPD4Q7Z3J3 1758 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 RREB1Q92766 1687 aa6.71□□□□□ -1.34
CLK3-219ENST00000567805 C11orf95C9JLR9 678 aaPredicted RBP6.7□□□□□ -1.34
CLK3-219ENST00000567805 CDCA8Q53HL2 280 aa6.7□□□□□ -1.34
CLK3-219ENST00000567805 NUP188Q5SRE5 1749 aa6.7□□□□□ -1.34
CLK3-219ENST00000567805 PARD3Q8TEW0 1356 aa6.69□□□□□ -1.34
CLK3-219ENST00000567805 CCDC7Q96M83 1385 aa6.69□□□□□ -1.34
CLK3-219ENST00000567805 OVOS2A0A0G2JMS6 1433 aa6.69□□□□□ -1.34
CLK3-219ENST00000567805 CSB-PGBD3P0DP91 1061 aa6.69□□□□□ -1.34
CLK3-219ENST00000567805 CDCA7Q9BWT1 371 aaPredicted RBP6.69□□□□□ -1.34
CLK3-219ENST00000567805 CARD10Q9BWT7 1032 aa6.69□□□□□ -1.34
CLK3-219ENST00000567805 ERBB3P21860 1342 aa6.69□□□□□ -1.34
CLK3-219ENST00000567805 RGPD2P0DJD1 1756 aa6.68□□□□□ -1.34
CLK3-219ENST00000567805 TRIM37O94972 964 aa6.68□□□□□ -1.34
CLK3-219ENST00000567805 EN1Q05925 392 aaPredicted RBP6.68□□□□□ -1.34
CLK3-219ENST00000567805 DDB1Q16531 1140 aa6.68□□□□□ -1.34
CLK3-219ENST00000567805 CCER1Q8TC90 406 aaPredicted RBP6.68□□□□□ -1.34
CLK3-219ENST00000567805 COG3Q96JB2 828 aa6.68□□□□□ -1.34
CLK3-219ENST00000567805 CLEC11AQ9Y240 323 aa6.68□□□□□ -1.34
CLK3-219ENST00000567805 LRP5O75197 1615 aa6.68□□□□□ -1.34
CLK3-219ENST00000567805 BCL9O00512 1426 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 TNS2Q63HR2 1409 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 SPDYE2BA6NHP3 402 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 APBA3O96018 575 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 SPDYE6P0CI01 402 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms