RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 DNMT3LQ9UJW3 386 aa9.36□□□□□ -0.91
VPS35-205ENST00000563984 ATP1B4Q9UN42 357 aaPredicted RBP9.36□□□□□ -0.91
VPS35-205ENST00000563984 SOS2Q07890 1332 aaPredicted RBP9.35□□□□□ -0.91
VPS35-205ENST00000563984 RTL5Q5HYW3 569 aaPredicted RBP9.35□□□□□ -0.91
VPS35-205ENST00000563984 KANK3Q6NY19 840 aa9.35□□□□□ -0.91
VPS35-205ENST00000563984 PROCA1Q8NCQ7 364 aaPredicted RBP9.35□□□□□ -0.91
VPS35-205ENST00000563984 HELBQ8NG08 1087 aaPredicted RBP9.35□□□□□ -0.91
VPS35-205ENST00000563984 MAP10Q9P2G4 905 aa9.35□□□□□ -0.91
VPS35-205ENST00000563984 ADAM23O75077 832 aa9.34□□□□□ -0.91
VPS35-205ENST00000563984 RNFT1Q5M7Z0 435 aa9.34□□□□□ -0.91
VPS35-205ENST00000563984 PPP2R2DQ66LE6 453 aa9.34□□□□□ -0.91
VPS35-205ENST00000563984 PER1O15534 1290 aaPredicted RBP9.33□□□□□ -0.92
VPS35-205ENST00000563984 BMP2P12643 396 aa9.33□□□□□ -0.92
VPS35-205ENST00000563984 CDK15Q96Q40 435 aa9.33□□□□□ -0.92
VPS35-205ENST00000563984 SLURP2P0DP57 97 aa9.32□□□□□ -0.92
VPS35-205ENST00000563984 NANOS1Q8WY41 292 aaKnown RBP9.32□□□□□ -0.92
VPS35-205ENST00000563984 PCMTD1Q96MG8 357 aaPredicted RBP9.32□□□□□ -0.92
VPS35-205ENST00000563984 NR3C2P08235 984 aa9.31□□□□□ -0.92
VPS35-205ENST00000563984 LINC00528Q8N1L1 170 aa9.31□□□□□ -0.92
VPS35-205ENST00000563984 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.3□□□□□ -0.92
VPS35-205ENST00000563984 F12P00748 615 aaPredicted RBP9.3□□□□□ -0.92
VPS35-205ENST00000563984 FAM174AQ8TBP5 190 aa9.3□□□□□ -0.92
VPS35-205ENST00000563984 MARSP56192 900 aaKnown RBP9.29□□□□□ -0.92
VPS35-205ENST00000563984 MEIOBQ8N635 442 aa9.29□□□□□ -0.92
VPS35-205ENST00000563984 FOXJ1Q92949 421 aa9.29□□□□□ -0.92
VPS35-205ENST00000563984 KRTAP9-2Q9BYQ4 174 aa9.29□□□□□ -0.92
VPS35-205ENST00000563984 PTSQ03393 145 aa9.28□□□□□ -0.92
VPS35-205ENST00000563984 UPP2O95045 317 aa9.27□□□□□ -0.93
VPS35-205ENST00000563984 FBXO31Q5XUX0 539 aaPredicted RBP9.27□□□□□ -0.93
VPS35-205ENST00000563984 SCARF2Q96GP6 870 aaPredicted RBP9.27□□□□□ -0.93
VPS35-205ENST00000563984 GRM5P41594 1212 aa9.26□□□□□ -0.93
VPS35-205ENST00000563984 CTDSPL2Q05D32 466 aa9.26□□□□□ -0.93
VPS35-205ENST00000563984 NR5A1Q13285 461 aa9.26□□□□□ -0.93
VPS35-205ENST00000563984 ARID5BQ14865 1188 aa9.26□□□□□ -0.93
VPS35-205ENST00000563984 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.26□□□□□ -0.93
VPS35-205ENST00000563984 RFC5P40937 340 aa9.25□□□□□ -0.93
VPS35-205ENST00000563984 ARMC2Q8NEN0 867 aa9.25□□□□□ -0.93
VPS35-205ENST00000563984 KRTAP9-6A0A140TA67 174 aa9.24□□□□□ -0.93
VPS35-205ENST00000563984 MSTNO14793 375 aa9.24□□□□□ -0.93
VPS35-205ENST00000563984 ITGB2P05107 769 aa9.24□□□□□ -0.93
VPS35-205ENST00000563984 AGERQ15109 404 aa9.24□□□□□ -0.93
VPS35-205ENST00000563984 TTBK1Q5TCY1 1321 aaPredicted RBP9.24□□□□□ -0.93
VPS35-205ENST00000563984 AP1G2O75843 785 aa9.23□□□□□ -0.93
VPS35-205ENST00000563984 PLA2G4EQ3MJ16 856 aa9.23□□□□□ -0.93
VPS35-205ENST00000563984 CCDC155Q8N6L0 562 aa9.23□□□□□ -0.93
VPS35-205ENST00000563984 PSMG3-AS1Q96PY0 264 aa9.23□□□□□ -0.93
VPS35-205ENST00000563984 TMEM259Q4ZIN3 620 aa9.22□□□□□ -0.93
VPS35-205ENST00000563984 C4orf48Q5BLP8 95 aa9.22□□□□□ -0.93
VPS35-205ENST00000563984 SPOCK3Q9BQ16 436 aa9.22□□□□□ -0.93
VPS35-205ENST00000563984 TTLL8A6PVC2 850 aa9.21□□□□□ -0.94
VPS35-205ENST00000563984 LYPD4Q6UWN0 246 aa9.21□□□□□ -0.94
VPS35-205ENST00000563984 VWA5B2Q8N398 1253 aa9.2□□□□□ -0.94
VPS35-205ENST00000563984 LRRN4Q8WUT4 740 aa9.2□□□□□ -0.94
VPS35-205ENST00000563984 TSEN34Q9BSV6 310 aaKnown RBP9.2□□□□□ -0.94
VPS35-205ENST00000563984 SLC35F4A4IF30 521 aa9.19□□□□□ -0.94
VPS35-205ENST00000563984 FIGNL2A6NMB9 653 aa9.19□□□□□ -0.94
VPS35-205ENST00000563984 USP17L8P0C7I0 530 aa9.19□□□□□ -0.94
VPS35-205ENST00000563984 NBPF14Q5TI25 921 aa9.19□□□□□ -0.94
VPS35-205ENST00000563984 GPKOWQ92917 476 aaPredicted RBP eCLIP9.19□□□□□ -0.94
VPS35-205ENST00000563984 PROCP04070 461 aa9.18□□□□□ -0.94
VPS35-205ENST00000563984 DCAF5Q96JK2 942 aa9.18□□□□□ -0.94
VPS35-205ENST00000563984 MAGEB6P1A0A0J9YX57 407 aa9.17□□□□□ -0.94
VPS35-205ENST00000563984 BPHLQ86WA6 291 aaPredicted RBP9.17□□□□□ -0.94
VPS35-205ENST00000563984 CARD14Q9BXL6 1004 aa9.17□□□□□ -0.94
VPS35-205ENST00000563984 ADAMTS2O95450 1211 aa9.16□□□□□ -0.94
VPS35-205ENST00000563984 ITGA6P23229 1130 aa9.16□□□□□ -0.94
VPS35-205ENST00000563984 NR6A1Q15406 480 aa9.16□□□□□ -0.94
VPS35-205ENST00000563984 SV2AQ7L0J3 742 aa9.16□□□□□ -0.94
VPS35-205ENST00000563984 ZC3H4Q9UPT8 1303 aaKnown RBP9.15□□□□□ -0.94
VPS35-205ENST00000563984 Q8N3U1 123 aa9.15□□□□□ -0.94
VPS35-205ENST00000563984 PNMA1Q8ND90 353 aa9.15□□□□□ -0.94
VPS35-205ENST00000563984 FKBPLQ9UIM3 349 aa9.15□□□□□ -0.94
VPS35-205ENST00000563984 CDC14CA4D256 554 aa9.14□□□□□ -0.95
VPS35-205ENST00000563984 CELA2BP08218 269 aaPredicted RBP9.14□□□□□ -0.95
VPS35-205ENST00000563984 BANK1Q8NDB2 785 aa9.14□□□□□ -0.95
VPS35-205ENST00000563984 PDXDC2PQ6P474 469 aa9.13□□□□□ -0.95
VPS35-205ENST00000563984 SH3BP5LQ7L8J4 393 aa9.13□□□□□ -0.95
VPS35-205ENST00000563984 SH3RF1Q7Z6J0 888 aa9.13□□□□□ -0.95
VPS35-205ENST00000563984 HMX1Q9NP08 348 aaPredicted RBP9.13□□□□□ -0.95
VPS35-205ENST00000563984 CNTNAP5Q8WYK1 1306 aa9.12□□□□□ -0.95
VPS35-205ENST00000563984 FSHRP23945 695 aa9.11□□□□□ -0.95
VPS35-205ENST00000563984 MAP3K10Q02779 954 aa9.11□□□□□ -0.95
VPS35-205ENST00000563984 SRSF11Q05519 484 aaKnown RBP9.11□□□□□ -0.95
VPS35-205ENST00000563984 KRTAP1-3Q8IUG1 177 aa9.11□□□□□ -0.95
VPS35-205ENST00000563984 K7ELQ4 463 aaPredicted RBP9.1□□□□□ -0.95
VPS35-205ENST00000563984 SOCS7O14512 581 aa9.1□□□□□ -0.95
VPS35-205ENST00000563984 SPINT1O43278 529 aa9.1□□□□□ -0.95
VPS35-205ENST00000563984 VASH1Q7L8A9 365 aaPredicted RBP9.1□□□□□ -0.95
VPS35-205ENST00000563984 EPS8L1Q8TE68 723 aa9.1□□□□□ -0.95
VPS35-205ENST00000563984 C1QTNF2Q9BXJ5 285 aa9.1□□□□□ -0.95
VPS35-205ENST00000563984 GPSM3Q9Y4H4 160 aa9.1□□□□□ -0.95
VPS35-205ENST00000563984 EMILIN1Q9Y6C2 1016 aa9.1□□□□□ -0.95
VPS35-205ENST00000563984 TRIM34Q9BYJ4 488 aa9.09□□□□□ -0.95
VPS35-205ENST00000563984 PHF20L1A8MW92 1017 aa9.08□□□□□ -0.96
VPS35-205ENST00000563984 APBB1O00213 710 aa9.08□□□□□ -0.96
VPS35-205ENST00000563984 PTK2Q05397 1052 aa9.08□□□□□ -0.96
VPS35-205ENST00000563984 ERFEQ4G0M1 354 aa9.08□□□□□ -0.96
VPS35-205ENST00000563984 TRMT44Q8IYL2 757 aaKnown RBP9.08□□□□□ -0.96
VPS35-205ENST00000563984 GALNT6Q8NCL4 622 aa9.08□□□□□ -0.96
VPS35-205ENST00000563984 ARHGAP9Q9BRR9 750 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms