RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 ARID5AQ03989 594 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 PTK7Q13308 1070 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 PTPROQ16827 1216 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 CCDC144BQ3MJ40 725 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 TAF7LQ5H9L4 462 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 IER5LQ5T953 404 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 NT5DC4Q86YG4 428 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 PPARGC1BQ86YN6 1023 aaKnown RBP2.8□□□□□ -1.96
RTF1-207ENST00000561076 PDCD7Q8N8D1 485 aaKnown RBP2.8□□□□□ -1.96
RTF1-207ENST00000561076 PLPP7Q8NBV4 271 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 C1orf216Q8TAB5 229 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 EPS8L1Q8TE68 723 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 GTF3C2Q8WUA4 911 aaPredicted RBP2.8□□□□□ -1.96
RTF1-207ENST00000561076 ARMC5Q96C12 935 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 KCNH8Q96L42 1107 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 PRIMPOLQ96LW4 560 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 TGIF2Q9GZN2 237 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 SLKQ9H2G2 1235 aaPredicted RBP2.8□□□□□ -1.96
RTF1-207ENST00000561076 ESF1Q9H501 851 aaKnown RBP2.8□□□□□ -1.96
RTF1-207ENST00000561076 INPP5FQ9Y2H2 1132 aa2.8□□□□□ -1.96
RTF1-207ENST00000561076 GTF3C5Q9Y5Q8 519 aaPredicted RBP2.8□□□□□ -1.96
RTF1-207ENST00000561076 TPD52L2O43399 206 aaKnown RBP2.79□□□□□ -1.96
RTF1-207ENST00000561076 PTCD1O75127 700 aaKnown RBP2.79□□□□□ -1.96
RTF1-207ENST00000561076 RAB11FIP3O75154 756 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 FAM13AO94988 1023 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 FBXO45P0C2W1 286 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 PLCB3Q01970 1234 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 TAGLNQ01995 201 aaKnown RBP2.79□□□□□ -1.96
RTF1-207ENST00000561076 GUCA2AQ02747 115 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 PTK2Q05397 1052 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 PDE3BQ13370 1112 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 NFE2L2Q16236 605 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 MAP7D1Q3KQU3 841 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 FBXO33Q7Z6M2 555 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 TICAM2Q86XR7 235 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 CCAR1Q8IX12 1150 aaKnown RBP2.79□□□□□ -1.96
RTF1-207ENST00000561076 RGL4Q8IZJ4 473 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 LARGE2Q8N3Y3 721 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 SLC43A3Q8NBI5 491 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 TTC13Q8NBP0 860 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 MORC4Q8TE76 937 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 UBE2Q2Q8WVN8 375 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 EYA1Q99502 592 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 MKNK1Q9BUB5 465 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 TMEM134Q9H6X4 195 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 UTP3Q9NQZ2 479 aaKnown RBP eCLIP2.79□□□□□ -1.963e-7■■■■■ 37.3
RTF1-207ENST00000561076 METTL5Q9NRN9 209 aaKnown RBP2.79□□□□□ -1.96
RTF1-207ENST00000561076 BCCIPQ9P287 314 aaKnown RBP eCLIP2.79□□□□□ -1.96
RTF1-207ENST00000561076 PPME1Q9Y570 386 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 PCDHGA4Q9Y5G9 962 aa2.79□□□□□ -1.96
RTF1-207ENST00000561076 SBNO2Q9Y2G9 1366 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 CFAP99D6REC4 459 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 RNF40O75150 1001 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 LDHBP07195 334 aaKnown RBP2.78□□□□□ -1.96
RTF1-207ENST00000561076 CTHP32929 405 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 FXR2P51116 673 aaKnown RBP eCLIP2.78□□□□□ -1.96
RTF1-207ENST00000561076 Q3C1V9 767 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 OXLD1Q5BKU9 147 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 ZNF662Q6ZS27 426 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 PRPF38AQ8NAV1 312 aaKnown RBP2.78□□□□□ -1.96
RTF1-207ENST00000561076 TTC16Q8NEE8 873 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 ARMC2Q8NEN0 867 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 TATDN2Q93075 761 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 PCGF6Q9BYE7 350 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 OSBPL2Q9H1P3 480 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 CXXC1Q9P0U4 656 aaPredicted RBP2.78□□□□□ -1.96
RTF1-207ENST00000561076 FKBPLQ9UIM3 349 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 PCDHGC3Q9UN70 934 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 DOLKQ9UPQ8 538 aa2.78□□□□□ -1.96
RTF1-207ENST00000561076 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.78□□□□□ -1.96
RTF1-207ENST00000561076 NOP58Q9Y2X3 529 aaKnown RBP2.78□□□□□ -1.96
RTF1-207ENST00000561076 RIMBP2O15034 1052 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 U2SURPO15042 1029 aaKnown RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 PRPF40AO75400 957 aaKnown RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 PTPREP23469 700 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 SCNN1AP37088 669 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 GTF2IP78347 998 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 IRX5P78411 483 aaPredicted RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 KCNH2Q12809 1159 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 BMS1Q14692 1282 aaKnown RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 KMT5BQ4FZB7 885 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 NOM1Q5C9Z4 860 aaKnown RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 PPP4R3BQ5MIZ7 849 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 CCDC102BQ68D86 513 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 RETREG3Q86VR2 466 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 DZIP3Q86Y13 1208 aaKnown RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 CKAP2LQ8IYA6 745 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 EXOC8Q8IYI6 725 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 ZNF654Q8IZM8 581 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 BUD13Q9BRD0 619 aaKnown RBP eCLIP2.77□□□□□ -1.972e-8■■■■□ 22.6
RTF1-207ENST00000561076 CYLDQ9NQC7 956 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 CEP126Q9P2H0 1117 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 MAGEC2Q9UBF1 373 aaPredicted RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 PARP2Q9UGN5 583 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 R3HCC1Q9Y3T6 440 aaKnown RBP2.77□□□□□ -1.97
RTF1-207ENST00000561076 RIPOR2Q9Y4F9 1068 aa2.77□□□□□ -1.97
RTF1-207ENST00000561076 LOC102724159A0A0B4J2E5 919 aa2.76□□□□□ -1.97
RTF1-207ENST00000561076 GPR37L1O60883 481 aa2.76□□□□□ -1.97
RTF1-207ENST00000561076 S100BP04271 92 aaPredicted RBP2.76□□□□□ -1.97
RTF1-207ENST00000561076 P4HBP07237 508 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms