RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 CHIC1Q5VXU3 224 aa5.52□□□□□ -1.53
RTF1-207ENST00000561076 AEBP2Q6ZN18 517 aaPredicted RBP5.21□□□□□ -1.58
RTF1-207ENST00000561076 PHF23Q9BUL5 403 aaPredicted RBP4.82□□□□□ -1.64
RTF1-207ENST00000561076 PLPPR3Q6T4P5 718 aa4.72□□□□□ -1.65
RTF1-207ENST00000561076 EHMT2Q96KQ7 1210 aa4.71□□□□□ -1.66
RTF1-207ENST00000561076 SLC24A1O60721 1099 aa4.51□□□□□ -1.69
RTF1-207ENST00000561076 SENP3Q9H4L4 574 aaPredicted RBP4.5□□□□□ -1.69
RTF1-207ENST00000561076 KCNA4P22459 653 aa4.46□□□□□ -1.7
RTF1-207ENST00000561076 SLC4A1APQ9BWU0 796 aaKnown RBP4.39□□□□□ -1.71
RTF1-207ENST00000561076 CSRNP3Q8WYN3 585 aa4.36□□□□□ -1.71
RTF1-207ENST00000561076 AMER1Q5JTC6 1135 aaPredicted RBP4.33□□□□□ -1.72
RTF1-207ENST00000561076 ADRA2BP18089 450 aa4.3□□□□□ -1.72
RTF1-207ENST00000561076 NCBP3Q53F19 620 aaKnown RBP4.27□□□□□ -1.73
RTF1-207ENST00000561076 RTN4Q9NQC3 1192 aaKnown RBP4.25□□□□□ -1.73
RTF1-207ENST00000561076 PPP4R3CPQ6ZMV5 832 aa4.18□□□□□ -1.74
RTF1-207ENST00000561076 PPP6R1Q9UPN7 881 aa4.14□□□□□ -1.75
RTF1-207ENST00000561076 NPM3O75607 178 aaKnown RBP4.07□□□□□ -1.76
RTF1-207ENST00000561076 FOXD1Q16676 465 aa4.05□□□□□ -1.76
RTF1-207ENST00000561076 FOXD4L1Q9NU39 408 aa4.05□□□□□ -1.76
RTF1-207ENST00000561076 ZBTB22O15209 634 aa4.04□□□□□ -1.76
RTF1-207ENST00000561076 FKBP8Q14318 412 aa4.02□□□□□ -1.77
RTF1-207ENST00000561076 PIAS4Q8N2W9 510 aaPredicted RBP4□□□□□ -1.77
RTF1-207ENST00000561076 CNKSR2Q8WXI2 1034 aa4□□□□□ -1.77
RTF1-207ENST00000561076 SCAF1Q9H7N4 1312 aaKnown RBP3.99□□□□□ -1.77
RTF1-207ENST00000561076 BCANQ96GW7 911 aa3.99□□□□□ -1.77
RTF1-207ENST00000561076 HAP1P54257 671 aaPredicted RBP3.97□□□□□ -1.77
RTF1-207ENST00000561076 DCAF8L2P0C7V8 631 aa3.95□□□□□ -1.78
RTF1-207ENST00000561076 PLCB2Q00722 1185 aa3.94□□□□□ -1.78
RTF1-207ENST00000561076 PRKCSHP14314 528 aaPredicted RBP3.9□□□□□ -1.79
RTF1-207ENST00000561076 TAOK2Q9UL54 1235 aa3.9□□□□□ -1.79
RTF1-207ENST00000561076 TPRNQ4KMQ1 711 aa3.87□□□□□ -1.79
RTF1-207ENST00000561076 DAXXQ9UER7 740 aaPredicted RBP3.87□□□□□ -1.79
RTF1-207ENST00000561076 ATXN8OSP0DMR3 200 aa3.86□□□□□ -1.79
RTF1-207ENST00000561076 ERICH6Q7L0X2 663 aa3.85□□□□□ -1.79
RTF1-207ENST00000561076 VSIG10Q8N0Z9 540 aa3.85□□□□□ -1.79
RTF1-207ENST00000561076 MYCNP04198 464 aaPredicted RBP3.83□□□□□ -1.8
RTF1-207ENST00000561076 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.83□□□□□ -1.8
RTF1-207ENST00000561076 FBXO3Q9UK99 471 aa3.83□□□□□ -1.8
RTF1-207ENST00000561076 ARXQ96QS3 562 aa3.82□□□□□ -1.8
RTF1-207ENST00000561076 DNAJC5BQ9UF47 199 aa3.81□□□□□ -1.8
RTF1-207ENST00000561076 RNF216Q9NWF9 866 aaPredicted RBP3.8□□□□□ -1.8
RTF1-207ENST00000561076 TULP1O00294 542 aaPredicted RBP3.77□□□□□ -1.81
RTF1-207ENST00000561076 RANGAP1P46060 587 aaPredicted RBP3.76□□□□□ -1.81
RTF1-207ENST00000561076 NBR1Q14596 966 aa3.76□□□□□ -1.81
RTF1-207ENST00000561076 HOMEZQ8IX15 550 aa3.76□□□□□ -1.81
RTF1-207ENST00000561076 CFAP44Q96MT7 982 aa3.75□□□□□ -1.81
RTF1-207ENST00000561076 GTF3C3Q9Y5Q9 886 aa3.75□□□□□ -1.81
RTF1-207ENST00000561076 TIMELESSQ9UNS1 1208 aa3.74□□□□□ -1.81
RTF1-207ENST00000561076 PAXIP1Q6ZW49 1069 aaPredicted RBP3.73□□□□□ -1.81
RTF1-207ENST00000561076 BBXQ8WY36 941 aaPredicted RBP3.72□□□□□ -1.81
RTF1-207ENST00000561076 SLC4A2P04920 1241 aa3.71□□□□□ -1.82
RTF1-207ENST00000561076 MAPK8IP2Q13387 824 aaPredicted RBP3.71□□□□□ -1.82
RTF1-207ENST00000561076 VASPP50552 380 aaPredicted RBP3.7□□□□□ -1.82
RTF1-207ENST00000561076 C14orf37Q86TY3 774 aa3.7□□□□□ -1.82
RTF1-207ENST00000561076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.69□□□□□ -1.82
RTF1-207ENST00000561076 MSH5O43196 834 aa3.69□□□□□ -1.82
RTF1-207ENST00000561076 HNRNPUL2Q1KMD3 747 aaKnown RBP3.69□□□□□ -1.82
RTF1-207ENST00000561076 SPRYD3Q8NCJ5 442 aa3.68□□□□□ -1.82
RTF1-207ENST00000561076 FBLN2P98095 1184 aa3.67□□□□□ -1.82
RTF1-207ENST00000561076 SAMD1Q6SPF0 538 aaPredicted RBP3.67□□□□□ -1.82
RTF1-207ENST00000561076 KDM2AQ9Y2K7 1162 aa3.67□□□□□ -1.82
RTF1-207ENST00000561076 SPDYE4A6NLX3 237 aa3.66□□□□□ -1.82
RTF1-207ENST00000561076 ECM2O94769 699 aaPredicted RBP3.66□□□□□ -1.82
RTF1-207ENST00000561076 KLHL34Q8N239 644 aa3.66□□□□□ -1.82
RTF1-207ENST00000561076 HOXD11P31277 338 aaPredicted RBP3.64□□□□□ -1.83
RTF1-207ENST00000561076 TMEM132AQ24JP5 1023 aa3.63□□□□□ -1.83
RTF1-207ENST00000561076 PKD2Q13563 968 aa3.62□□□□□ -1.83
RTF1-207ENST00000561076 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.62□□□□□ -1.832e-7■■□□□ 13.4
RTF1-207ENST00000561076 TSHZ2Q9NRE2 1034 aa3.62□□□□□ -1.83
RTF1-207ENST00000561076 APLP2Q06481 763 aa3.61□□□□□ -1.83
RTF1-207ENST00000561076 IFNLR1Q8IU57 520 aaPredicted RBP3.61□□□□□ -1.83
RTF1-207ENST00000561076 SPOCK2Q92563 424 aa3.61□□□□□ -1.83
RTF1-207ENST00000561076 DMRT2Q9Y5R5 561 aa3.6□□□□□ -1.83
RTF1-207ENST00000561076 PODXL2Q9NZ53 605 aa3.59□□□□□ -1.83
RTF1-207ENST00000561076 ATF5Q9Y2D1 282 aaPredicted RBP3.59□□□□□ -1.83
RTF1-207ENST00000561076 DCAF8L1A6NGE4 600 aa3.58□□□□□ -1.84
RTF1-207ENST00000561076 CHGAP10645 457 aaKnown RBP3.58□□□□□ -1.84
RTF1-207ENST00000561076 ZNF219Q9P2Y4 722 aaPredicted RBP3.57□□□□□ -1.84
RTF1-207ENST00000561076 NPM1P06748 294 aaKnown RBP eCLIP3.56□□□□□ -1.84
RTF1-207ENST00000561076 PLCD3Q8N3E9 789 aa3.55□□□□□ -1.84
RTF1-207ENST00000561076 SUPT5HO00267 1087 aaKnown RBP3.54□□□□□ -1.84
RTF1-207ENST00000561076 PLEKHG5O94827 1062 aa3.54□□□□□ -1.84
RTF1-207ENST00000561076 CIZ1Q9ULV3 898 aaPredicted RBP3.54□□□□□ -1.84
RTF1-207ENST00000561076 RGL2O15211 777 aa3.53□□□□□ -1.84
RTF1-207ENST00000561076 NPM2Q86SE8 214 aaKnown RBP3.51□□□□□ -1.85
RTF1-207ENST00000561076 PROM2Q8N271 834 aa3.51□□□□□ -1.85
RTF1-207ENST00000561076 P3H3Q8IVL6 736 aa3.5□□□□□ -1.85
RTF1-207ENST00000561076 STAG3Q9UJ98 1225 aa3.5□□□□□ -1.85
RTF1-207ENST00000561076 MIER1Q8N108 512 aa3.49□□□□□ -1.85
RTF1-207ENST00000561076 TRIM41Q8WV44 630 aa3.49□□□□□ -1.85
RTF1-207ENST00000561076 ZBTB47Q9UFB7 747 aaPredicted RBP3.49□□□□□ -1.85
RTF1-207ENST00000561076 DNAJC5Q9H3Z4 198 aa3.48□□□□□ -1.85
RTF1-207ENST00000561076 WDR70Q9NW82 654 aa3.48□□□□□ -1.85
RTF1-207ENST00000561076 NEUROD2Q15784 382 aa3.47□□□□□ -1.85
RTF1-207ENST00000561076 U3KPZ7 1027 aaPredicted RBP3.47□□□□□ -1.85
RTF1-207ENST00000561076 HS6ST3Q8IZP7 471 aa3.46□□□□□ -1.86
RTF1-207ENST00000561076 RYDENQ9NUL5 291 aaKnown RBP3.46□□□□□ -1.86
RTF1-207ENST00000561076 ZBTB7CA1YPR0 619 aa3.44□□□□□ -1.86
RTF1-207ENST00000561076 MKRN4PQ13434 485 aaPredicted RBP3.44□□□□□ -1.86
RTF1-207ENST00000561076 LMOD2Q6P5Q4 547 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms