RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 CPDO75976 1380 aa22.46■■□□□ 1.19
SNX1-203ENST00000558040 ABCC6O95255 1503 aa22.46■■□□□ 1.19
SNX1-203ENST00000558040 U2SURPO15042 1029 aaKnown RBP22.45■■□□□ 1.18
SNX1-203ENST00000558040 ZC3H6P61129 1189 aaKnown RBP22.45■■□□□ 1.18
SNX1-203ENST00000558040 U2AF1L5P0DN76 240 aaPredicted RBP22.44■■□□□ 1.18
SNX1-203ENST00000558040 IL13P35225 146 aa22.44■■□□□ 1.18
SNX1-203ENST00000558040 BLMP54132 1417 aaPredicted RBP22.44■■□□□ 1.18
SNX1-203ENST00000558040 U2AF1Q01081 240 aaKnown RBP eCLIP22.44■■□□□ 1.18
SNX1-203ENST00000558040 EIF4A2Q14240 407 aaKnown RBP22.43■■□□□ 1.18
SNX1-203ENST00000558040 KIAA0232Q92628 1395 aa22.41■■□□□ 1.18
SNX1-203ENST00000558040 PNNQ9H307 717 aaKnown RBP22.41■■□□□ 1.18
SNX1-203ENST00000558040 JCADQ9P266 1359 aa22.39■■□□□ 1.18
SNX1-203ENST00000558040 HNRNPUQ00839 825 aaKnown RBP eCLIP22.39■■□□□ 1.17
SNX1-203ENST00000558040 PRDM11Q9NQV5 511 aa22.39■■□□□ 1.17
SNX1-203ENST00000558040 COL18A1P39060 1754 aa22.36■■□□□ 1.17
SNX1-203ENST00000558040 FCHSD2O94868 740 aa22.36■■□□□ 1.17
SNX1-203ENST00000558040 RGPD1P0DJD0 1748 aa22.36■■□□□ 1.17
SNX1-203ENST00000558040 CHRNA2Q15822 529 aa22.35■■□□□ 1.17
SNX1-203ENST00000558040 RUNDC1Q96C34 613 aa22.35■■□□□ 1.17
SNX1-203ENST00000558040 LTV1Q96GA3 475 aaPredicted RBP22.35■■□□□ 1.17
SNX1-203ENST00000558040 NEFMP07197 916 aa22.34■■□□□ 1.17
SNX1-203ENST00000558040 ANKRD24Q8TF21 1146 aa22.34■■□□□ 1.17
SNX1-203ENST00000558040 IGSF1Q8N6C5 1336 aa22.33■■□□□ 1.17
SNX1-203ENST00000558040 CCDC146Q8IYE0 955 aa22.33■■□□□ 1.17
SNX1-203ENST00000558040 AXIN2Q9Y2T1 843 aa22.33■■□□□ 1.17
SNX1-203ENST00000558040 ERBB3P21860 1342 aa22.32■■□□□ 1.16
SNX1-203ENST00000558040 HMOX1P09601 288 aa22.32■■□□□ 1.16
SNX1-203ENST00000558040 HSPA1LP34931 641 aa22.32■■□□□ 1.16
SNX1-203ENST00000558040 RSPH6AQ9H0K4 717 aa22.32■■□□□ 1.16
SNX1-203ENST00000558040 LMO7Q8WWI1 1683 aa22.32■■□□□ 1.16
SNX1-203ENST00000558040 MAPK8IP3Q9UPT6 1336 aa22.31■■□□□ 1.16
SNX1-203ENST00000558040 COL14A1Q05707 1796 aaKnown RBP22.31■■□□□ 1.16
SNX1-203ENST00000558040 RGPD5Q99666 1765 aa22.31■■□□□ 1.16
SNX1-203ENST00000558040 FAM208AQ9UK61 1670 aaKnown RBP22.31■■□□□ 1.16
SNX1-203ENST00000558040 EYA1Q99502 592 aa22.31■■□□□ 1.16
SNX1-203ENST00000558040 SPATA31A6Q5VVP1 1343 aa22.31■■□□□ 1.16
SNX1-203ENST00000558040 PRKAR2BP31323 418 aa22.3■■□□□ 1.16
SNX1-203ENST00000558040 SULT6B1Q6IMI4 303 aa22.3■■□□□ 1.16
SNX1-203ENST00000558040 NGEFQ8N5V2 710 aa22.3■■□□□ 1.16
SNX1-203ENST00000558040 KDRP35968 1356 aa22.29■■□□□ 1.16
SNX1-203ENST00000558040 PLEKHF1Q96S99 279 aa22.29■■□□□ 1.16
SNX1-203ENST00000558040 ZBED9Q6R2W3 1325 aa22.29■■□□□ 1.16
SNX1-203ENST00000558040 FAM83GA6ND36 823 aa22.28■■□□□ 1.16
SNX1-203ENST00000558040 NUTM2BA6NNL0 878 aaPredicted RBP22.28■■□□□ 1.16
SNX1-203ENST00000558040 NUTM2EB1AL46 878 aaPredicted RBP22.28■■□□□ 1.16
SNX1-203ENST00000558040 CSB-PGBD3P0DP91 1061 aa22.28■■□□□ 1.16
SNX1-203ENST00000558040 NUTM2AQ8IVF1 878 aaPredicted RBP22.28■■□□□ 1.16
SNX1-203ENST00000558040 CAMTA1Q9Y6Y1 1673 aa22.27■■□□□ 1.16
SNX1-203ENST00000558040 APAF1O14727 1248 aa22.27■■□□□ 1.16
SNX1-203ENST00000558040 AEBP1Q8IUX7 1158 aa22.26■■□□□ 1.15
SNX1-203ENST00000558040 COL5A2P05997 1499 aaPredicted RBP22.26■■□□□ 1.15
SNX1-203ENST00000558040 ADAMTS2O95450 1211 aa22.25■■□□□ 1.15
SNX1-203ENST00000558040 NBPF6Q5VWK0 638 aa22.25■■□□□ 1.15
SNX1-203ENST00000558040 TCP11L2Q8N4U5 519 aa22.25■■□□□ 1.15
SNX1-203ENST00000558040 NBPF4Q96M43 638 aa22.25■■□□□ 1.15
SNX1-203ENST00000558040 NCAPD2Q15021 1401 aa22.24■■□□□ 1.15
SNX1-203ENST00000558040 NLRP2Q9NX02 1062 aa22.24■■□□□ 1.15
SNX1-203ENST00000558040 WDR17Q8IZU2 1322 aa22.24■■□□□ 1.15
SNX1-203ENST00000558040 EVA1CP58658 441 aa22.23■■□□□ 1.15
SNX1-203ENST00000558040 NCBP3Q53F19 620 aaKnown RBP22.23■■□□□ 1.15
SNX1-203ENST00000558040 RGPD2P0DJD1 1756 aa22.22■■□□□ 1.15
SNX1-203ENST00000558040 CENPBP07199 599 aaPredicted RBP22.22■■□□□ 1.15
SNX1-203ENST00000558040 BTG4Q9NY30 223 aa22.22■■□□□ 1.15
SNX1-203ENST00000558040 PLCH1Q4KWH8 1693 aa22.21■■□□□ 1.15
SNX1-203ENST00000558040 USHBP1Q8N6Y0 703 aa22.21■■□□□ 1.15
SNX1-203ENST00000558040 SENP3-EIF4A1A0A087X0R7 540 aa22.2■■□□□ 1.14
SNX1-203ENST00000558040 TOM1L2Q6ZVM7 507 aa22.2■■□□□ 1.14
SNX1-203ENST00000558040 STRN4Q9NRL3 753 aa22.2■■□□□ 1.14
SNX1-203ENST00000558040 SALL2Q9Y467 1007 aaPredicted RBP22.2■■□□□ 1.14
SNX1-203ENST00000558040 TMPOP42166 694 aaKnown RBP22.19■■□□□ 1.14
SNX1-203ENST00000558040 PHACTR3Q96KR7 559 aa22.19■■□□□ 1.14
SNX1-203ENST00000558040 NWD2Q9ULI1 1742 aa22.18■■□□□ 1.14
SNX1-203ENST00000558040 NFE2L2Q16236 605 aa22.18■■□□□ 1.14
SNX1-203ENST00000558040 CRB1P82279 1406 aa22.17■■□□□ 1.14
SNX1-203ENST00000558040 PLEKHG2Q9H7P9 1386 aa22.17■■□□□ 1.14
SNX1-203ENST00000558040 NEUROD2Q15784 382 aa22.17■■□□□ 1.14
SNX1-203ENST00000558040 CCDC27Q2M243 656 aa22.17■■□□□ 1.14
SNX1-203ENST00000558040 RRP7AQ9Y3A4 280 aaKnown RBP22.17■■□□□ 1.14
SNX1-203ENST00000558040 LRP6O75581 1613 aa22.17■■□□□ 1.14
SNX1-203ENST00000558040 GAS2L2Q8NHY3 880 aa22.16■■□□□ 1.14
SNX1-203ENST00000558040 FBXO41Q8TF61 875 aa22.16■■□□□ 1.14
SNX1-203ENST00000558040 RAPGEF4Q8WZA2 1011 aa22.16■■□□□ 1.14
SNX1-203ENST00000558040 CARD10Q9BWT7 1032 aa22.16■■□□□ 1.14
SNX1-203ENST00000558040 SLIT2O94813 1529 aa22.16■■□□□ 1.14
SNX1-203ENST00000558040 RIPK4P57078 832 aa22.15■■□□□ 1.14
SNX1-203ENST00000558040 LMOD3Q0VAK6 560 aa22.15■■□□□ 1.14
SNX1-203ENST00000558040 PDE3BQ13370 1112 aa22.15■■□□□ 1.14
SNX1-203ENST00000558040 MEX3CQ5U5Q3 659 aaKnown RBP22.15■■□□□ 1.14
SNX1-203ENST00000558040 LARP1Q6PKG0 1096 aaKnown RBP22.15■■□□□ 1.14
SNX1-203ENST00000558040 NRAPQ86VF7 1730 aa22.14■■□□□ 1.14
SNX1-203ENST00000558040 NGLY1Q96IV0 654 aa22.14■■□□□ 1.13
SNX1-203ENST00000558040 C8orf37Q96NL8 207 aa22.14■■□□□ 1.13
SNX1-203ENST00000558040 TATP17735 454 aaPredicted RBP22.13■■□□□ 1.13
SNX1-203ENST00000558040 AMOTQ4VCS5 1084 aa22.13■■□□□ 1.13
SNX1-203ENST00000558040 ZNF521Q96K83 1311 aa22.12■■□□□ 1.13
SNX1-203ENST00000558040 PLEKHO1Q53GL0 409 aaPredicted RBP22.12■■□□□ 1.13
SNX1-203ENST00000558040 WWC1Q8IX03 1113 aa22.12■■□□□ 1.13
SNX1-203ENST00000558040 PHF23Q9BUL5 403 aaPredicted RBP22.12■■□□□ 1.13
SNX1-203ENST00000558040 MTHFSDQ2M296 383 aaKnown RBP22.11■■□□□ 1.13
SNX1-203ENST00000558040 PARP4Q9UKK3 1724 aaKnown RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms