RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 CALR3Q96L12 384 aaKnown RBP3.48□□□□□ -1.85
PRPF39-207ENST00000554439 RRP7BPQ9NSQ0 103 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 CHIC2Q9UKJ5 165 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 CFTRP13569 1480 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 FHAD1B1AJZ9 1412 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 FGD6Q6ZV73 1430 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 KRTAP4-8A0A0G2JLE6 195 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 MOXD2PA6NHM9 499 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 GMPRP36959 345 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 ABL2P42684 1182 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 MFAP1P55081 439 aaKnown RBP3.48□□□□□ -1.85
PRPF39-207ENST00000554439 RTL5Q5HYW3 569 aaPredicted RBP3.48□□□□□ -1.85
PRPF39-207ENST00000554439 ZNF428Q96B54 188 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 CDCA7LQ96GN5 454 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 MRS2Q9HD23 443 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 NOP58Q9Y2X3 529 aaKnown RBP3.48□□□□□ -1.85
PRPF39-207ENST00000554439 PCDHB15Q9Y5E8 787 aa3.48□□□□□ -1.85
PRPF39-207ENST00000554439 UACAQ9BZF9 1416 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 TRIM6-TRIM34B2RNG4 842 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 NDUFV2P19404 249 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 PRKRIP1Q9H875 184 aaPredicted RBP3.47□□□□□ -1.85
PRPF39-207ENST00000554439 AKNAQ7Z591 1439 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 PTPN23Q9H3S7 1636 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 FGD5Q6ZNL6 1462 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 RCCD1A6NED2 376 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 CFAP70Q5T0N1 1121 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 TMCO4Q5TGY1 634 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 HFM1A2PYH4 1435 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 NAIPQ13075 1403 aa3.47□□□□□ -1.85
PRPF39-207ENST00000554439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 GJA5P36382 358 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 EIF4G2P78344 907 aaKnown RBP eCLIP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 CSPP1Q1MSJ5 1256 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 FOXD4L5Q5VV16 416 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 FOXD4L4Q8WXT5 416 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 PRR14Q9BWN1 585 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 NXF1Q9UBU9 619 aaKnown RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 MTUS2Q5JR59 1369 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 DENND4BO75064 1496 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 CNTLNQ9NXG0 1405 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 USP17L8P0C7I0 530 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 COL9A1P20849 921 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 PROX2Q3B8N5 592 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 RBM46Q8TBY0 533 aaKnown RBP3.46□□□□□ -1.86
PRPF39-207ENST00000554439 L3MBTL2Q969R5 705 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 NCAPD3P42695 1498 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 FYCO1Q9BQS8 1478 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 ZBED9Q6R2W3 1325 aa3.46□□□□□ -1.86
PRPF39-207ENST00000554439 CASKIN1Q8WXD9 1431 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 CARNS1A5YM72 827 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 ERICH6BQ5W0A0 696 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 PBXIP1Q96AQ6 731 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 HMX1Q9NP08 348 aaPredicted RBP3.45□□□□□ -1.86
PRPF39-207ENST00000554439 TSKSQ9UJT2 592 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 KDM6BO15054 1643 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.45□□□□□ -1.86
PRPF39-207ENST00000554439 NCOA2Q15596 1464 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 HMGXB3Q12766 1538 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 AP1G2O75843 785 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 NBPF8Q3BBV2 869 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 HDGFL1Q5TGJ6 251 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 CABLES1Q8TDN4 633 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 LRRIQ1Q96JM4 1722 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 CCDC7Q96M83 1385 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 RAD54L2Q9Y4B4 1467 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 PACS2Q86VP3 889 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 KRTAP4-12Q9BQ66 201 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 POLR3GLQ9BT43 218 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 TRIM34Q9BYJ4 488 aa3.45□□□□□ -1.86
PRPF39-207ENST00000554439 SALL2Q9Y467 1007 aaPredicted RBP3.45□□□□□ -1.86
PRPF39-207ENST00000554439 BRD1O95696 1058 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 CCDC136Q96JN2 1154 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 NCOA1Q15788 1441 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 FMN1Q68DA7 1419 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 KIF7Q2M1P5 1343 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 SNAPC4Q5SXM2 1469 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 DDX11L8A8MPP1 907 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 PRPF38BQ5VTL8 546 aaKnown RBP3.44□□□□□ -1.86
PRPF39-207ENST00000554439 KANK3Q6NY19 840 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 IPO9Q96P70 1041 aaKnown RBP3.44□□□□□ -1.86
PRPF39-207ENST00000554439 MPHOSPH9Q99550 1183 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 TMEM134Q9H6X4 195 aa3.44□□□□□ -1.86
PRPF39-207ENST00000554439 H3BM21 787 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 NUDT18Q6ZVK8 323 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 ZNF516Q92618 1163 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 UCN2Q96RP3 112 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 ATP13A2Q9NQ11 1180 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 PCDHGC3Q9UN70 934 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 USTQ9Y2C2 406 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 NDUFB9Q9Y6M9 179 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 MYOM3Q5VTT5 1437 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 RNF223E7ERA6 249 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 ADAM23O75077 832 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 ANP32AP39687 249 aaKnown RBP3.43□□□□□ -1.86
PRPF39-207ENST00000554439 RPIAP49247 311 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 CTDSPL2Q05D32 466 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 KCNA1Q09470 495 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 NUTM1Q86Y26 1132 aa3.43□□□□□ -1.86
PRPF39-207ENST00000554439 SULF1Q8IWU6 871 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms