RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 MAGEB6P1A0A0J9YX57 407 aa6.78□□□□□ -1.32
SRP54-204ENST00000553923 SPINT1O43278 529 aa6.78□□□□□ -1.32
SRP54-204ENST00000553923 CBLBQ13191 982 aa6.78□□□□□ -1.32
SRP54-204ENST00000553923 PPP1R26Q5T8A7 1209 aaPredicted RBP6.78□□□□□ -1.32
SRP54-204ENST00000553923 KCTD17Q8N5Z5 321 aa6.78□□□□□ -1.32
SRP54-204ENST00000553923 CNTNAP3BQ96NU0 1288 aa6.78□□□□□ -1.32
SRP54-204ENST00000553923 CNTNAP3Q9BZ76 1288 aa6.78□□□□□ -1.32
SRP54-204ENST00000553923 SLC35F4A4IF30 521 aa6.77□□□□□ -1.33
SRP54-204ENST00000553923 CTDSPL2Q05D32 466 aa6.77□□□□□ -1.33
SRP54-204ENST00000553923 HELBQ8NG08 1087 aaPredicted RBP6.77□□□□□ -1.33
SRP54-204ENST00000553923 ADAMTS8Q9UP79 889 aa6.77□□□□□ -1.33
SRP54-204ENST00000553923 FIGNL2A6NMB9 653 aa6.76□□□□□ -1.33
SRP54-204ENST00000553923 CLK2P49760 499 aaKnown RBP6.76□□□□□ -1.33
SRP54-204ENST00000553923 RNFT1Q5M7Z0 435 aa6.76□□□□□ -1.33
SRP54-204ENST00000553923 FBXO31Q5XUX0 539 aaPredicted RBP6.76□□□□□ -1.33
SRP54-204ENST00000553923 ZNF385CQ66K41 422 aaPredicted RBP6.76□□□□□ -1.33
SRP54-204ENST00000553923 PDXDC2PQ6P474 469 aa6.76□□□□□ -1.33
SRP54-204ENST00000553923 CCDC155Q8N6L0 562 aa6.76□□□□□ -1.33
SRP54-204ENST00000553923 OCSTAMPQ9BR26 566 aa6.76□□□□□ -1.33
SRP54-204ENST00000553923 CARD14Q9BXL6 1004 aa6.76□□□□□ -1.33
SRP54-204ENST00000553923 COL25A1Q9BXS0 654 aaPredicted RBP6.76□□□□□ -1.33
SRP54-204ENST00000553923 RASSF7Q02833 373 aa6.75□□□□□ -1.33
SRP54-204ENST00000553923 SLURP2P0DP57 97 aa6.74□□□□□ -1.33
SRP54-204ENST00000553923 TMEM151AQ8N4L1 468 aa6.74□□□□□ -1.33
SRP54-204ENST00000553923 PGPEP1Q9NXJ5 209 aa6.74□□□□□ -1.33
SRP54-204ENST00000553923 ARHGEF15O94989 841 aa6.73□□□□□ -1.33
SRP54-204ENST00000553923 GDF11O95390 407 aa6.73□□□□□ -1.33
SRP54-204ENST00000553923 WHAMMQ8TF30 809 aa6.73□□□□□ -1.33
SRP54-204ENST00000553923 KCTD15Q96SI1 283 aaPredicted RBP6.73□□□□□ -1.33
SRP54-204ENST00000553923 ITGA6P23229 1130 aa6.72□□□□□ -1.33
SRP54-204ENST00000553923 CTSOP43234 321 aaPredicted RBP6.72□□□□□ -1.33
SRP54-204ENST00000553923 INTS6LQ5JSJ4 861 aaKnown RBP6.72□□□□□ -1.33
SRP54-204ENST00000553923 LRRN4Q8WUT4 740 aa6.72□□□□□ -1.33
SRP54-204ENST00000553923 ARHGAP9Q9BRR9 750 aa6.72□□□□□ -1.33
SRP54-204ENST00000553923 SLC24A3Q9HC58 644 aa6.72□□□□□ -1.33
SRP54-204ENST00000553923 POLR3EQ9NVU0 708 aa6.72□□□□□ -1.33
SRP54-204ENST00000553923 FKBPLQ9UIM3 349 aa6.72□□□□□ -1.33
SRP54-204ENST00000553923 SENP3-EIF4A1A0A087X0R7 540 aa6.71□□□□□ -1.34
SRP54-204ENST00000553923 VWA5B2Q8N398 1253 aa6.71□□□□□ -1.34
SRP54-204ENST00000553923 AGBL1Q96MI9 1066 aa6.71□□□□□ -1.34
SRP54-204ENST00000553923 RSPH6AQ9H0K4 717 aa6.71□□□□□ -1.34
SRP54-204ENST00000553923 CDV3Q9UKY7 258 aaKnown RBP6.71□□□□□ -1.34
SRP54-204ENST00000553923 DHX9Q08211 1270 aaKnown RBP6.7□□□□□ -1.34
SRP54-204ENST00000553923 KDF1Q8NAX2 398 aaPredicted RBP6.7□□□□□ -1.34
SRP54-204ENST00000553923 INSM2Q96T92 566 aaPredicted RBP6.7□□□□□ -1.34
SRP54-204ENST00000553923 ZC3H4Q9UPT8 1303 aaKnown RBP6.7□□□□□ -1.34
SRP54-204ENST00000553923 NR6A1Q15406 480 aa6.69□□□□□ -1.34
SRP54-204ENST00000553923 RNF217Q8TC41 542 aa6.69□□□□□ -1.34
SRP54-204ENST00000553923 SLC10A4Q96EP9 437 aa6.69□□□□□ -1.34
SRP54-204ENST00000553923 RNF225M0QZC1 329 aaPredicted RBP6.68□□□□□ -1.34
SRP54-204ENST00000553923 ADD1P35611 737 aaKnown RBP6.68□□□□□ -1.34
SRP54-204ENST00000553923 RELBQ01201 579 aa6.68□□□□□ -1.34
SRP54-204ENST00000553923 PPP2R2DQ66LE6 453 aa6.68□□□□□ -1.34
SRP54-204ENST00000553923 SV2AQ7L0J3 742 aa6.68□□□□□ -1.34
SRP54-204ENST00000553923 ZBTB33Q86T24 672 aa6.68□□□□□ -1.34
SRP54-204ENST00000553923 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.68□□□□□ -1.34
SRP54-204ENST00000553923 LILRA1O75019 489 aa6.67□□□□□ -1.34
SRP54-204ENST00000553923 FOXD4L5Q5VV16 416 aaPredicted RBP6.67□□□□□ -1.34
SRP54-204ENST00000553923 SVOPQ8N4V2 548 aa6.67□□□□□ -1.34
SRP54-204ENST00000553923 TMPRSS4Q9NRS4 437 aa6.67□□□□□ -1.34
SRP54-204ENST00000553923 GPSM3Q9Y4H4 160 aa6.67□□□□□ -1.34
SRP54-204ENST00000553923 PTK2Q05397 1052 aa6.66□□□□□ -1.34
SRP54-204ENST00000553923 SKIV2LQ15477 1246 aaKnown RBP6.66□□□□□ -1.34
SRP54-204ENST00000553923 LYPD4Q6UWN0 246 aa6.66□□□□□ -1.34
SRP54-204ENST00000553923 ZNF784Q8NCA9 323 aaPredicted RBP6.66□□□□□ -1.34
SRP54-204ENST00000553923 PROCA1Q8NCQ7 364 aaPredicted RBP6.66□□□□□ -1.34
SRP54-204ENST00000553923 ADAM32Q8TC27 787 aa6.66□□□□□ -1.34
SRP54-204ENST00000553923 ZNF395Q9H8N7 513 aaPredicted RBP6.66□□□□□ -1.34
SRP54-204ENST00000553923 CDC14CA4D256 554 aa6.65□□□□□ -1.34
SRP54-204ENST00000553923 EPS8L1Q8TE68 723 aa6.65□□□□□ -1.34
SRP54-204ENST00000553923 POLMQ9NP87 494 aaPredicted RBP6.65□□□□□ -1.34
SRP54-204ENST00000553923 CUEDC1Q9NWM3 386 aaPredicted RBP6.65□□□□□ -1.34
SRP54-204ENST00000553923 DNMT3AQ9Y6K1 912 aaPredicted RBP6.65□□□□□ -1.34
SRP54-204ENST00000553923 ESPNB1AK53 854 aa6.64□□□□□ -1.35
SRP54-204ENST00000553923 ERVH48-1M5A8F1 160 aa6.64□□□□□ -1.35
SRP54-204ENST00000553923 ADH1AP07327 375 aa6.64□□□□□ -1.35
SRP54-204ENST00000553923 IRS1P35568 1242 aa6.64□□□□□ -1.35
SRP54-204ENST00000553923 PTGIRP43119 386 aa6.64□□□□□ -1.35
SRP54-204ENST00000553923 GAS6Q14393 721 aa6.64□□□□□ -1.35
SRP54-204ENST00000553923 ADAMTS2O95450 1211 aa6.63□□□□□ -1.35
SRP54-204ENST00000553923 SRSF11Q05519 484 aaKnown RBP6.63□□□□□ -1.35
SRP54-204ENST00000553923 SH3D19Q5HYK7 790 aa6.63□□□□□ -1.35
SRP54-204ENST00000553923 KANK3Q6NY19 840 aa6.62□□□□□ -1.35
SRP54-204ENST00000553923 HMX1Q9NP08 348 aaPredicted RBP6.62□□□□□ -1.35
SRP54-204ENST00000553923 IGHA1P01876 353 aa6.61□□□□□ -1.35
SRP54-204ENST00000553923 CELA2BP08218 269 aaPredicted RBP6.61□□□□□ -1.35
SRP54-204ENST00000553923 NBPF20Q3BBV1 942 aa6.61□□□□□ -1.35
SRP54-204ENST00000553923 RNF144AP50876 292 aaPredicted RBP6.6□□□□□ -1.35
SRP54-204ENST00000553923 MARSP56192 900 aaKnown RBP6.6□□□□□ -1.35
SRP54-204ENST00000553923 LYSMD3Q7Z3D4 306 aa6.6□□□□□ -1.35
SRP54-204ENST00000553923 SCARF2Q96GP6 870 aaPredicted RBP6.6□□□□□ -1.35
SRP54-204ENST00000553923 AP1G2O75843 785 aa6.59□□□□□ -1.35
SRP54-204ENST00000553923 GPAT2Q6NUI2 795 aa6.59□□□□□ -1.35
SRP54-204ENST00000553923 FAM117AQ9C073 453 aa6.59□□□□□ -1.35
SRP54-204ENST00000553923 RAB15P59190 212 aa6.58□□□□□ -1.36
SRP54-204ENST00000553923 FOXK2Q01167 660 aa6.58□□□□□ -1.36
SRP54-204ENST00000553923 DZIP3Q86Y13 1208 aaKnown RBP6.58□□□□□ -1.36
SRP54-204ENST00000553923 SEPT12Q8IYM1 358 aa6.58□□□□□ -1.36
SRP54-204ENST00000553923 ITGB2P05107 769 aa6.57□□□□□ -1.36
SRP54-204ENST00000553923 USP17L8P0C7I0 530 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms