RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 AEBP2Q6ZN18 517 aaPredicted RBP20.62■□□□□ 0.89
SRP54-204ENST00000553923 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
SRP54-204ENST00000553923 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
SRP54-204ENST00000553923 PHF23Q9BUL5 403 aaPredicted RBP17.31■□□□□ 0.36
SRP54-204ENST00000553923 FOXD1Q16676 465 aa16.39■□□□□ 0.21
SRP54-204ENST00000553923 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
SRP54-204ENST00000553923 MSH5O43196 834 aa15.32■□□□□ 0.04
SRP54-204ENST00000553923 PPP6R1Q9UPN7 881 aa15.29■□□□□ 0.04
SRP54-204ENST00000553923 PIAS4Q8N2W9 510 aaPredicted RBP15.22■□□□□ 0.03
SRP54-204ENST00000553923 ADRA2BP18089 450 aa15.18■□□□□ 0.02
SRP54-204ENST00000553923 POTEDQ86YR6 584 aa15.17■□□□□ 0.02
SRP54-204ENST00000553923 MAPK8IP2Q13387 824 aaPredicted RBP14□□□□□ -0.17
SRP54-204ENST00000553923 DMRT2Q9Y5R5 561 aa13.91□□□□□ -0.18
SRP54-204ENST00000553923 SCAF1Q9H7N4 1312 aaKnown RBP13.81□□□□□ -0.2
SRP54-204ENST00000553923 PPP4R3CPQ6ZMV5 832 aa13.54□□□□□ -0.24
SRP54-204ENST00000553923 HOXD11P31277 338 aaPredicted RBP13.38□□□□□ -0.27
SRP54-204ENST00000553923 CNKSR2Q8WXI2 1034 aa13.3□□□□□ -0.28
SRP54-204ENST00000553923 DCAF8L1A6NGE4 600 aa13.22□□□□□ -0.29
SRP54-204ENST00000553923 RNF216Q9NWF9 866 aaPredicted RBP13.22□□□□□ -0.29
SRP54-204ENST00000553923 CACNB1Q02641 598 aaPredicted RBP13.18□□□□□ -0.3
SRP54-204ENST00000553923 RNF39Q9H2S5 420 aa13.11□□□□□ -0.31
SRP54-204ENST00000553923 DNAJC5BQ9UF47 199 aa12.95□□□□□ -0.34
SRP54-204ENST00000553923 NCBP3Q53F19 620 aaKnown RBP12.93□□□□□ -0.34
SRP54-204ENST00000553923 C1QBPQ07021 282 aaKnown RBP12.88□□□□□ -0.35
SRP54-204ENST00000553923 NPM3O75607 178 aaKnown RBP12.83□□□□□ -0.36
SRP54-204ENST00000553923 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.65□□□□□ -0.38
SRP54-204ENST00000553923 KCNA4P22459 653 aa12.48□□□□□ -0.41
SRP54-204ENST00000553923 U3KPZ7 1027 aaPredicted RBP12.45□□□□□ -0.42
SRP54-204ENST00000553923 SLC4A2P04920 1241 aa12.31□□□□□ -0.44
SRP54-204ENST00000553923 SPINK5Q9NQ38 1064 aaPredicted RBP12.29□□□□□ -0.44
SRP54-204ENST00000553923 DSG3P32926 999 aa12.25□□□□□ -0.45
SRP54-204ENST00000553923 CAPN15O75808 1086 aa12.21□□□□□ -0.45
SRP54-204ENST00000553923 TRHP20396 242 aaPredicted RBP11.99□□□□□ -0.49
SRP54-204ENST00000553923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.98□□□□□ -0.49
SRP54-204ENST00000553923 APLP2Q06481 763 aa11.98□□□□□ -0.49
SRP54-204ENST00000553923 HNRNPUL2Q1KMD3 747 aaKnown RBP11.98□□□□□ -0.49
SRP54-204ENST00000553923 ZNF219Q9P2Y4 722 aaPredicted RBP11.98□□□□□ -0.49
SRP54-204ENST00000553923 ABCB7O75027 752 aa11.93□□□□□ -0.5
SRP54-204ENST00000553923 SAMD1Q6SPF0 538 aaPredicted RBP11.93□□□□□ -0.5
SRP54-204ENST00000553923 POTEHQ6S545 545 aa11.85□□□□□ -0.51
SRP54-204ENST00000553923 MYCNP04198 464 aaPredicted RBP11.82□□□□□ -0.52
SRP54-204ENST00000553923 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
SRP54-204ENST00000553923 POLA2Q14181 598 aa11.68□□□□□ -0.54
SRP54-204ENST00000553923 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
SRP54-204ENST00000553923 ATF5Q9Y2D1 282 aaPredicted RBP11.63□□□□□ -0.55
SRP54-204ENST00000553923 RBM42Q9BTD8 480 aaKnown RBP11.6□□□□□ -0.55
SRP54-204ENST00000553923 ZBTB22O15209 634 aa11.52□□□□□ -0.57
SRP54-204ENST00000553923 CHRDL2Q6WN34 429 aa11.42□□□□□ -0.58
SRP54-204ENST00000553923 ZBTB12Q9Y330 459 aaPredicted RBP11.39□□□□□ -0.59
SRP54-204ENST00000553923 AKT1S1Q96B36 256 aa11.36□□□□□ -0.59
SRP54-204ENST00000553923 ATXN8OSP0DMR3 200 aa11.32□□□□□ -0.6
SRP54-204ENST00000553923 OSCARQ8IYS5 282 aa11.3□□□□□ -0.6
SRP54-204ENST00000553923 REM2Q8IYK8 340 aaPredicted RBP11.26□□□□□ -0.61
SRP54-204ENST00000553923 PIP4P2Q8N4L2 257 aa11.16□□□□□ -0.62
SRP54-204ENST00000553923 PITPNM1O00562 1244 aa11.14□□□□□ -0.63
SRP54-204ENST00000553923 FXR2P51116 673 aaKnown RBP eCLIP11.1□□□□□ -0.63
SRP54-204ENST00000553923 MKRN4PQ13434 485 aaPredicted RBP11.09□□□□□ -0.63
SRP54-204ENST00000553923 SPDYE2BA6NHP3 402 aa11.07□□□□□ -0.64
SRP54-204ENST00000553923 SPDYE6P0CI01 402 aa11.07□□□□□ -0.64
SRP54-204ENST00000553923 SPDYE2Q495Y8 402 aa11.07□□□□□ -0.64
SRP54-204ENST00000553923 FBLN2P98095 1184 aa11.05□□□□□ -0.64
SRP54-204ENST00000553923 SP7Q8TDD2 431 aaPredicted RBP11.05□□□□□ -0.64
SRP54-204ENST00000553923 SSUH2Q9Y2M2 353 aa10.96□□□□□ -0.65
SRP54-204ENST00000553923 HAX1O00165 279 aa10.92□□□□□ -0.66
SRP54-204ENST00000553923 ZNF692Q9BU19 519 aaPredicted RBP10.91□□□□□ -0.66
SRP54-204ENST00000553923 EVX2Q03828 476 aa10.89□□□□□ -0.67
SRP54-204ENST00000553923 SPDYE1Q8NFV5 336 aaPredicted RBP10.88□□□□□ -0.67
SRP54-204ENST00000553923 CSRNP3Q8WYN3 585 aa10.88□□□□□ -0.67
SRP54-204ENST00000553923 CLEC11AQ9Y240 323 aa10.84□□□□□ -0.67
SRP54-204ENST00000553923 PRKAR2AP13861 404 aaKnown RBP10.83□□□□□ -0.68
SRP54-204ENST00000553923 PABPN1Q86U42 306 aaKnown RBP eCLIP10.75□□□□□ -0.69
SRP54-204ENST00000553923 C19orf67A6NJJ6 358 aa10.74□□□□□ -0.69
SRP54-204ENST00000553923 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
SRP54-204ENST00000553923 PRR29P0C7W0 189 aa10.67□□□□□ -0.7
SRP54-204ENST00000553923 GABBR2O75899 941 aa10.59□□□□□ -0.71
SRP54-204ENST00000553923 EHMT2Q96KQ7 1210 aa10.58□□□□□ -0.72
SRP54-204ENST00000553923 FARP1Q9Y4F1 1045 aaPredicted RBP10.54□□□□□ -0.72
SRP54-204ENST00000553923 CD44P16070 742 aaKnown RBP10.47□□□□□ -0.73
SRP54-204ENST00000553923 CREBZFQ9NS37 354 aa10.45□□□□□ -0.74
SRP54-204ENST00000553923 SPDYE4A6NLX3 237 aa10.44□□□□□ -0.74
SRP54-204ENST00000553923 POTEIP0CG38 1075 aa10.42□□□□□ -0.74
SRP54-204ENST00000553923 STAG3Q9UJ98 1225 aa10.41□□□□□ -0.74
SRP54-204ENST00000553923 CLCN6P51797 869 aa10.36□□□□□ -0.75
SRP54-204ENST00000553923 LHX8Q68G74 356 aa10.36□□□□□ -0.75
SRP54-204ENST00000553923 ZNF579Q8NAF0 562 aaKnown RBP10.34□□□□□ -0.75
SRP54-204ENST00000553923 ZRANB1Q9UGI0 708 aa10.31□□□□□ -0.76
SRP54-204ENST00000553923 MNX1P50219 401 aaPredicted RBP10.3□□□□□ -0.76
SRP54-204ENST00000553923 PROM2Q8N271 834 aa10.26□□□□□ -0.77
SRP54-204ENST00000553923 GALR2O43603 387 aaPredicted RBP10.22□□□□□ -0.77
SRP54-204ENST00000553923 DCBLD2Q96PD2 775 aa10.21□□□□□ -0.77
SRP54-204ENST00000553923 NPM1P06748 294 aaKnown RBP eCLIP10.17□□□□□ -0.78
SRP54-204ENST00000553923 PHF12Q96QT6 1004 aa10.17□□□□□ -0.78
SRP54-204ENST00000553923 PAK3O75914 559 aaPredicted RBP10.13□□□□□ -0.79
SRP54-204ENST00000553923 POTEB2H3BUK9 544 aa10.08□□□□□ -0.8
SRP54-204ENST00000553923 PELP1Q8IZL8 1130 aaKnown RBP10.07□□□□□ -0.8
SRP54-204ENST00000553923 MS4A3Q96HJ5 214 aa10.04□□□□□ -0.8
SRP54-204ENST00000553923 OTUD5Q96G74 571 aa10.03□□□□□ -0.8
SRP54-204ENST00000553923 ASTLQ6HA08 431 aaPredicted RBP10.02□□□□□ -0.81
SRP54-204ENST00000553923 CCDC61Q9Y6R9 512 aa10.02□□□□□ -0.81
SRP54-204ENST00000553923 TSPYL2Q9H2G4 693 aaPredicted RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 362.4 ms