RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SLC15A2Q16348 729 aa20.21■□□□□ 0.83
SHMT2-208ENST00000553868 USP47Q96K76 1375 aa20.21■□□□□ 0.83
SHMT2-208ENST00000553868 PELP1Q8IZL8 1130 aaKnown RBP20.2■□□□□ 0.82
SHMT2-208ENST00000553868 LMO7Q8WWI1 1683 aa20.19■□□□□ 0.82
SHMT2-208ENST00000553868 TULP4Q9NRJ4 1543 aa20.19■□□□□ 0.82
SHMT2-208ENST00000553868 THRAP3Q9Y2W1 955 aaKnown RBP20.19■□□□□ 0.82
SHMT2-208ENST00000553868 LRRC37A3O60309 1634 aa20.18■□□□□ 0.82
SHMT2-208ENST00000553868 TXNRD1Q16881 649 aa20.18■□□□□ 0.82
SHMT2-208ENST00000553868 NBPF1Q3BBV0 1214 aa20.17■□□□□ 0.82
SHMT2-208ENST00000553868 ATP7BP35670 1465 aa20.17■□□□□ 0.82
SHMT2-208ENST00000553868 C11orf95C9JLR9 678 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-208ENST00000553868 KLHL34Q8N239 644 aa20.16■□□□□ 0.82
SHMT2-208ENST00000553868 MAP3K5Q99683 1374 aa20.16■□□□□ 0.82
SHMT2-208ENST00000553868 COL5A2P05997 1499 aaPredicted RBP20.14■□□□□ 0.81
SHMT2-208ENST00000553868 WASLO00401 505 aaPredicted RBP20.14■□□□□ 0.81
SHMT2-208ENST00000553868 DDB1Q16531 1140 aa20.14■□□□□ 0.81
SHMT2-208ENST00000553868 TRAK1Q9UPV9 953 aa20.14■□□□□ 0.81
SHMT2-208ENST00000553868 MARCH10Q8NA82 808 aaPredicted RBP20.13■□□□□ 0.81
SHMT2-208ENST00000553868 EIF3AQ14152 1382 aaKnown RBP20.12■□□□□ 0.81
SHMT2-208ENST00000553868 HSPA6P17066 643 aa20.11■□□□□ 0.81
SHMT2-208ENST00000553868 CRB1P82279 1406 aa20.1■□□□□ 0.81
SHMT2-208ENST00000553868 CPDO75976 1380 aa20.1■□□□□ 0.81
SHMT2-208ENST00000553868 ZBTB7CA1YPR0 619 aa20.09■□□□□ 0.81
SHMT2-208ENST00000553868 NLGN2Q8NFZ4 835 aa20.09■□□□□ 0.81
SHMT2-208ENST00000553868 ATP10DQ9P241 1426 aa20.08■□□□□ 0.8
SHMT2-208ENST00000553868 SLC24A1O60721 1099 aa20.07■□□□□ 0.8
SHMT2-208ENST00000553868 ABTB2Q8N961 1025 aa20.07■□□□□ 0.8
SHMT2-208ENST00000553868 NUDT16Q96DE0 195 aaKnown RBP20.07■□□□□ 0.8
SHMT2-208ENST00000553868 AKAP12Q02952 1782 aa20.06■□□□□ 0.8
SHMT2-208ENST00000553868 ST20-MTHFSA0A0A6YYL1 179 aa20.06■□□□□ 0.8
SHMT2-208ENST00000553868 YBX3P16989 372 aaKnown RBP eCLIP20.06■□□□□ 0.89e-9■□□□□ 9.1
SHMT2-208ENST00000553868 ITSN1Q15811 1721 aa20.05■□□□□ 0.8
SHMT2-208ENST00000553868 ADGRB1O14514 1584 aa20.05■□□□□ 0.8
SHMT2-208ENST00000553868 DIEXFQ68CQ4 756 aaKnown RBP20.05■□□□□ 0.8
SHMT2-208ENST00000553868 USP19O94966 1318 aa20.04■□□□□ 0.8
SHMT2-208ENST00000553868 GCP02774 474 aa20.04■□□□□ 0.8
SHMT2-208ENST00000553868 ZNF827Q17R98 1081 aa20.04■□□□□ 0.8
SHMT2-208ENST00000553868 ACEP12821 1306 aa20.03■□□□□ 0.8
SHMT2-208ENST00000553868 PAPPAQ13219 1627 aa20.03■□□□□ 0.8
SHMT2-208ENST00000553868 TOM1L2Q6ZVM7 507 aa20.03■□□□□ 0.8
SHMT2-208ENST00000553868 ZNF526Q8TF50 670 aaPredicted RBP20.03■□□□□ 0.8
SHMT2-208ENST00000553868 WNK3Q9BYP7 1800 aa20.03■□□□□ 0.8
SHMT2-208ENST00000553868 BCL9O00512 1426 aa20.02■□□□□ 0.8
SHMT2-208ENST00000553868 CAPN15O75808 1086 aa20.02■□□□□ 0.8
SHMT2-208ENST00000553868 AATKQ6ZMQ8 1374 aa20.01■□□□□ 0.79
SHMT2-208ENST00000553868 GPBP1L1Q9HC44 474 aaPredicted RBP20.01■□□□□ 0.79
SHMT2-208ENST00000553868 CCDC7Q96M83 1385 aa20■□□□□ 0.79
SHMT2-208ENST00000553868 TOPAZ1Q8N9V7 1692 aa20■□□□□ 0.79
SHMT2-208ENST00000553868 POLR3AO14802 1390 aaPredicted RBP19.99■□□□□ 0.79
SHMT2-208ENST00000553868 ACSBG1Q96GR2 724 aa19.99■□□□□ 0.79
SHMT2-208ENST00000553868 TMF1P82094 1093 aa19.98■□□□□ 0.79
SHMT2-208ENST00000553868 WASHC2AQ641Q2 1341 aa19.98■□□□□ 0.79
SHMT2-208ENST00000553868 CDCA8Q53HL2 280 aa19.97■□□□□ 0.79
SHMT2-208ENST00000553868 CENPJQ9HC77 1338 aaPredicted RBP19.97■□□□□ 0.79
SHMT2-208ENST00000553868 SBNO2Q9Y2G9 1366 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 POLD1P28340 1107 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 NLRP13Q86W25 1043 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 TESK2Q96S53 571 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 LRRC4BQ9NT99 713 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 AXIN2Q9Y2T1 843 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 KIF7Q2M1P5 1343 aa19.96■□□□□ 0.79
SHMT2-208ENST00000553868 GRIN3BO60391 1043 aa19.95■□□□□ 0.78
SHMT2-208ENST00000553868 CDK19Q9BWU1 502 aa19.95■□□□□ 0.78
SHMT2-208ENST00000553868 DDX10Q13206 875 aaKnown RBP19.94■□□□□ 0.78
SHMT2-208ENST00000553868 NHSQ6T4R5 1651 aa19.94■□□□□ 0.78
SHMT2-208ENST00000553868 COL24A1Q17RW2 1714 aa19.93■□□□□ 0.78
SHMT2-208ENST00000553868 WDR17Q8IZU2 1322 aa19.93■□□□□ 0.78
SHMT2-208ENST00000553868 COL18A1P39060 1754 aa19.93■□□□□ 0.78
SHMT2-208ENST00000553868 COL13A1Q5TAT6 717 aaPredicted RBP19.92■□□□□ 0.78
SHMT2-208ENST00000553868 EXOC5O00471 708 aa19.91■□□□□ 0.78
SHMT2-208ENST00000553868 AKT1S1Q96B36 256 aa19.91■□□□□ 0.78
SHMT2-208ENST00000553868 CDCA7Q9BWT1 371 aaPredicted RBP19.91■□□□□ 0.78
SHMT2-208ENST00000553868 CCDC61Q9Y6R9 512 aa19.91■□□□□ 0.78
SHMT2-208ENST00000553868 PNPLA7Q6ZV29 1317 aa19.91■□□□□ 0.78
SHMT2-208ENST00000553868 ADCY9O60503 1353 aa19.91■□□□□ 0.78
SHMT2-208ENST00000553868 BTAF1O14981 1849 aa19.9■□□□□ 0.78
SHMT2-208ENST00000553868 PLEKHG3A1L390 1219 aa19.9■□□□□ 0.78
SHMT2-208ENST00000553868 ARHGEF28Q8N1W1 1705 aaKnown RBP19.9■□□□□ 0.78
SHMT2-208ENST00000553868 RGPD5Q99666 1765 aa19.9■□□□□ 0.78
SHMT2-208ENST00000553868 DNAJC5GQ8N7S2 189 aa19.89■□□□□ 0.77
SHMT2-208ENST00000553868 SLC16A10Q8TF71 515 aa19.89■□□□□ 0.77
SHMT2-208ENST00000553868 POLR3GLQ9BT43 218 aa19.89■□□□□ 0.77
SHMT2-208ENST00000553868 TUBGCP6Q96RT7 1819 aa19.88■□□□□ 0.77
SHMT2-208ENST00000553868 KAT6BQ8WYB5 2073 aa19.87■□□□□ 0.77
SHMT2-208ENST00000553868 QRICH2Q9H0J4 1663 aa19.87■□□□□ 0.77
SHMT2-208ENST00000553868 USP6P35125 1406 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 BRD4O60885 1362 aaPredicted RBP19.86■□□□□ 0.77
SHMT2-208ENST00000553868 QSER1Q2KHR3 1735 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 KIF3CO14782 793 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 CSB-PGBD3P0DP91 1061 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 KCNQ4P56696 695 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 NLRP6P59044 892 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 CARD10Q9BWT7 1032 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 SLIT3O75094 1523 aa19.86■□□□□ 0.77
SHMT2-208ENST00000553868 TNS2Q63HR2 1409 aa19.85■□□□□ 0.77
SHMT2-208ENST00000553868 APLP1P51693 650 aa19.84■□□□□ 0.77
SHMT2-208ENST00000553868 EVC2Q86UK5 1308 aa19.83■□□□□ 0.77
SHMT2-208ENST00000553868 PUS7Q96PZ0 661 aaKnown RBP19.83■□□□□ 0.77
SHMT2-208ENST00000553868 TFCP2L1Q9NZI6 479 aa19.83■□□□□ 0.77
SHMT2-208ENST00000553868 WWC3Q9ULE0 1092 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms